Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   BEN15_RS09130 Genome accession   NZ_CP016877
Coordinates   1726000..1728210 (-) Length   736 a.a.
NCBI ID   WP_065973277.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain KLDS 3.1003     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1721000..1733210
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BEN15_RS09105 (BEN15_09100) - 1721960..1722205 (-) 246 WP_022096737.1 hypothetical protein -
  BEN15_RS09110 (BEN15_09105) nth 1722838..1723482 (-) 645 WP_011681255.1 endonuclease III -
  BEN15_RS09115 (BEN15_09110) - 1723482..1724180 (-) 699 WP_002947201.1 DnaD domain-containing protein -
  BEN15_RS09120 (BEN15_09115) metA 1724252..1725196 (-) 945 WP_065973276.1 homoserine O-acetyltransferase MetA -
  BEN15_RS09125 (BEN15_09120) - 1725367..1725885 (-) 519 WP_002947203.1 adenine phosphoribosyltransferase -
  BEN15_RS09130 (BEN15_09125) recJ 1726000..1728210 (-) 2211 WP_065973277.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  BEN15_RS09135 (BEN15_09130) - 1728223..1728990 (-) 768 WP_065973278.1 SDR family NAD(P)-dependent oxidoreductase -
  BEN15_RS09140 (BEN15_09135) rnz 1728990..1729919 (-) 930 WP_065973279.1 ribonuclease Z -
  BEN15_RS09145 (BEN15_09140) - 1729951..1730592 (-) 642 WP_065973280.1 cystathionine beta-lyase -
  BEN15_RS09150 (BEN15_09145) hflX 1730585..1731823 (-) 1239 WP_065973281.1 GTPase HflX -

Sequence

Protein


Download         Length: 736 a.a.        Molecular weight: 82700.10 Da        Isoelectric Point: 4.3812

>NTDB_id=165083 BEN15_RS09130 WP_065973277.1 1726000..1728210(-) (recJ) [Streptococcus thermophilus strain KLDS 3.1003]
MITSTYDWKINTKEPDAGFFKLAKEHGLVKTAAKIAYERGIRTEEALEDFLKADLSHLHDPYLLHDMDKAVARIRQAIEN
YEQILVYGDYDADGMTSASIVKEALEMMGAEARVYLPNRFTDGYGPNESVYKYFIEQEGISLIITVDNGVAGNEAIAYAQ
EQGVDVIVTDHHSMPSQLPEAYAIVHPEHPGADYPFKYLAGCGVAFKIAMALLETIPTEMLDLVAIGTIADMVSLTDENR
IMVKVGLEILKTTERIGLQELLRISEVDLTTISEETVAFKIAPQLNALGRLDDPNPAIELLTGFDDEEAQAIALEINAKN
EERKEVVQNIFDEAMSMVDLDKPVQVLAKEGWHPGVLGIVAGRIMEQISQTVVVLNIEDGLAKGSARSLESINIFHALDD
HRDIFTAFGGHAGAAGMTLPEENLTQLSDILCSYVYDNDIDTSAKNTLNLDEELQLGELDLDTIRSLEKLAPFGMDNKKP
VFWLHDITVTQARTMGQNGAHLKFKVKQGKASFDVVAFNKGHLLQEFQQAQGLELAVTLSVNVWNGQTTLQLMLADVRVD
NVQLFDFRSKNMVLPEGLPTVEEASDEATAVVLDTLPNSETELKEWFDGKEFQAIYFKNRIKEAYYLTGYGTREQFARLY
KTIYQFPEFDVRYKLDDLSHYLKIDKILLIKMIQIFDELGFVTIDNGVMTVNKEAGKRDIEESKIFQDLKRLVKFQELMA
LGTPQEIYDWLYNQEQ

Nucleotide


Download         Length: 2211 bp        

>NTDB_id=165083 BEN15_RS09130 WP_065973277.1 1726000..1728210(-) (recJ) [Streptococcus thermophilus strain KLDS 3.1003]
ATGATTACATCAACGTATGATTGGAAAATAAACACAAAAGAGCCAGATGCTGGCTTTTTTAAACTTGCTAAAGAACATGG
ACTGGTAAAAACAGCAGCCAAGATTGCCTATGAACGTGGCATTAGGACAGAAGAGGCACTTGAAGACTTTCTAAAGGCAG
ATTTATCGCACCTTCATGATCCTTATCTGCTTCATGATATGGATAAAGCAGTGGCTAGAATCCGTCAGGCTATTGAAAAT
TATGAACAAATCTTAGTATATGGAGATTACGATGCGGATGGTATGACGTCAGCCTCGATTGTCAAAGAAGCCCTTGAAAT
GATGGGAGCTGAAGCTCGAGTATACTTGCCAAACCGTTTTACAGATGGTTATGGACCAAACGAAAGTGTCTATAAGTATT
TCATTGAGCAGGAAGGTATTTCACTCATCATTACAGTGGATAATGGGGTAGCTGGAAATGAGGCTATCGCTTATGCGCAA
GAGCAAGGTGTGGATGTTATCGTCACAGACCACCATAGCATGCCGTCACAGCTTCCAGAAGCTTATGCCATTGTTCATCC
AGAACATCCAGGTGCTGATTATCCTTTTAAGTATTTGGCGGGTTGTGGAGTAGCTTTCAAAATAGCAATGGCCCTCCTTG
AGACCATACCAACAGAGATGTTGGATTTGGTAGCTATAGGGACTATTGCTGATATGGTTAGCCTGACCGATGAAAATCGT
ATTATGGTTAAGGTTGGACTTGAAATTCTCAAGACTACTGAGCGTATTGGGCTTCAAGAATTGCTCCGTATTTCCGAAGT
AGACCTAACAACAATTTCTGAAGAAACAGTGGCTTTCAAAATAGCCCCTCAACTCAATGCCTTAGGACGTTTAGACGATC
CAAACCCAGCTATTGAACTATTAACCGGATTTGACGATGAGGAAGCGCAAGCCATTGCTCTGGAAATCAATGCCAAAAAT
GAAGAACGTAAGGAAGTTGTTCAAAACATCTTTGATGAAGCCATGAGCATGGTAGACTTGGATAAACCAGTTCAGGTTTT
GGCTAAGGAGGGCTGGCATCCTGGTGTACTCGGCATTGTTGCTGGCCGCATCATGGAGCAAATCAGTCAGACAGTAGTGG
TTTTAAATATTGAAGATGGCTTGGCTAAGGGGTCAGCTCGTAGTTTGGAATCTATCAATATCTTCCATGCACTTGATGAC
CACAGAGACATCTTTACTGCATTTGGAGGGCACGCTGGAGCAGCTGGTATGACCCTTCCAGAGGAAAATCTTACTCAACT
CTCAGATATTTTATGTAGTTATGTCTACGATAATGACATTGATACGAGTGCCAAAAATACGCTTAATTTAGACGAGGAGC
TACAACTCGGTGAGCTTGACTTGGATACCATAAGGAGCCTCGAAAAACTAGCACCTTTTGGTATGGATAATAAAAAGCCA
GTCTTTTGGCTACATGATATTACCGTTACTCAAGCTAGAACTATGGGGCAAAATGGAGCTCATCTTAAGTTTAAGGTTAA
GCAAGGCAAGGCTAGTTTTGATGTTGTCGCCTTTAACAAAGGGCATCTGCTTCAAGAATTTCAGCAAGCTCAGGGGTTGG
AATTAGCAGTGACGCTGTCCGTTAATGTATGGAATGGCCAGACAACACTACAGCTCATGTTGGCAGATGTGCGCGTGGAC
AATGTTCAGTTATTTGATTTTCGCTCAAAAAATATGGTACTACCTGAGGGCCTACCAACTGTAGAAGAGGCCTCAGACGA
AGCAACTGCAGTTGTCCTCGACACCCTACCGAATTCAGAGACGGAATTAAAAGAGTGGTTTGACGGTAAGGAATTCCAGG
CCATTTATTTTAAGAATCGCATTAAGGAAGCCTATTATCTGACAGGCTATGGAACTAGAGAGCAATTTGCAAGGCTCTAT
AAAACCATTTATCAATTCCCAGAATTTGATGTGCGCTATAAATTAGATGACCTCAGTCATTATCTTAAGATTGATAAAAT
TCTTCTCATCAAGATGATTCAAATTTTTGATGAATTGGGCTTTGTCACTATTGATAATGGTGTCATGACAGTTAATAAAG
AGGCTGGAAAACGTGATATTGAGGAAAGCAAGATTTTCCAGGACCTTAAACGTCTTGTCAAGTTCCAAGAACTCATGGCT
TTGGGAACACCACAGGAAATTTATGATTGGCTCTACAATCAGGAGCAGTAG

Domains

Predicted by InterProScan.

DHH family (DHH)

(83-228)

DHHA1 domain (DHHA1)

(317-431)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(583-731)

RecJ OB domain (RecJ_OB)

(451-556)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

67.027

100

0.674
  recJ Bacillus subtilis subsp. subtilis str. 168

37.388

100

0.397

Multiple sequence alignment