Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   BEN15_RS05845 Genome accession   NZ_CP016877
Coordinates   1091587..1093374 (+) Length   595 a.a.
NCBI ID   WP_065972995.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain KLDS 3.1003     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1086587..1098374
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BEN15_RS11680 - 1086723..1086872 (+) 150 WP_231107121.1 hypothetical protein -
  BEN15_RS05810 (BEN15_05805) - 1087112..1087357 (+) 246 WP_065972992.1 ABC transporter substrate-binding protein -
  BEN15_RS11685 - 1087350..1087829 (+) 480 WP_231107122.1 ABC transporter permease -
  BEN15_RS11990 (BEN15_05815) - 1087889..1088119 (+) 231 WP_155758743.1 ABC transporter permease -
  BEN15_RS11995 (BEN15_05820) - 1088177..1088392 (+) 216 WP_065972993.1 ABC transporter permease -
  BEN15_RS05830 (BEN15_05825) rplJ 1088683..1089186 (+) 504 WP_011225635.1 50S ribosomal protein L10 -
  BEN15_RS05835 (BEN15_05830) rplL 1089261..1089629 (+) 369 WP_002950038.1 50S ribosomal protein L7/L12 -
  BEN15_RS05840 (BEN15_05835) rcrP 1089838..1091574 (+) 1737 WP_065972994.1 ABC transporter ATP-binding protein Regulator
  BEN15_RS05845 (BEN15_05840) rcrQ 1091587..1093374 (+) 1788 WP_065972995.1 ABC transporter ATP-binding protein Regulator
  BEN15_RS05850 (BEN15_05845) queA 1093472..1094515 (-) 1044 WP_065972996.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  BEN15_RS05855 (BEN15_05850) - 1094665..1095366 (+) 702 WP_065972997.1 glucosamine-6-phosphate deaminase -
  BEN15_RS05860 (BEN15_05855) - 1095532..1096827 (-) 1296 WP_024704020.1 GHKL domain-containing protein -
  BEN15_RS05865 (BEN15_05860) - 1096827..1097537 (-) 711 WP_064355462.1 LytR/AlgR family response regulator transcription factor -

Sequence

Protein


Download         Length: 595 a.a.        Molecular weight: 66661.80 Da        Isoelectric Point: 5.0584

>NTDB_id=165059 BEN15_RS05845 WP_065972995.1 1091587..1093374(+) (rcrQ) [Streptococcus thermophilus strain KLDS 3.1003]
MKDNKKKTTHSSSFGRLWSYLQVYRFPLYLAIFLKIISVIMSVIEPVVIGLAITELTKNTLDIIKEVAGAHINVSYVGLV
LVFYLLRGLIYELASYYSNYFMTNAVQATVQDMRNEMIEKINRTSVSYFDKQQFGDLLGRFTSDVETVSNALQQSFLQVV
NAIFTLALVIGTVLYLNLQLGAVVVITIPISYFGARFIMSKSQPYFKQQADALGTLNGFVQENLTGFNVIKLFGREGRSL
DDFKEITEDLQKVGFKANFISGLMMPFLNGLSDLTYLIIAVLGGLQVLAGRLTIGNMQAFVQYVWQINQPIQNLTQLAGQ
LQSAKSSLDRIFQLMDEPDEANDATEVLEGDLTGQVIFNHVDFQYVADKPLIRDFNLEVNPGEMVAIVGPTGAGKSTIIN
LLMRFYDVTAGSISVDGHDIRNLSRKDYRKQFGMVLQDAWLFEGTIKENLRFGNLEATDEEIVEAAKAANVDHFIRTLPG
GYNMEINQESSNISLGQKQLLTIARALLADPKILILDEATSSVDTRLELLIQKAMKTLMQGRTSFVIAHRLSTIQEADKI
LFLKDGQIIEQGNHESLLADKGFYYDLYNSQFAEK

Nucleotide


Download         Length: 1788 bp        

>NTDB_id=165059 BEN15_RS05845 WP_065972995.1 1091587..1093374(+) (rcrQ) [Streptococcus thermophilus strain KLDS 3.1003]
ATGAAGGATAATAAAAAGAAAACAACTCATTCCTCAAGTTTTGGCCGCCTTTGGTCATACTTGCAGGTTTATCGTTTCCC
ACTTTACTTAGCTATTTTCCTGAAAATTATTAGTGTCATCATGAGTGTTATTGAGCCGGTGGTCATTGGTTTAGCCATTA
CGGAACTGACTAAAAATACACTGGACATTATTAAGGAGGTAGCAGGTGCTCATATCAACGTGTCCTACGTTGGTTTAGTT
TTGGTCTTTTACCTCTTGCGTGGTCTCATCTATGAGCTGGCTTCTTACTATTCCAACTATTTTATGACCAATGCCGTGCA
AGCAACGGTTCAGGATATGCGAAATGAGATGATTGAGAAAATCAATCGTACCTCAGTGTCATACTTTGATAAGCAACAAT
TTGGAGACCTTTTGGGTCGCTTTACTAGTGACGTCGAGACAGTTTCAAATGCCTTGCAGCAGTCATTCTTGCAGGTTGTC
AACGCCATCTTTACTCTAGCCTTGGTTATTGGGACAGTGCTTTACCTTAATCTTCAGTTGGGAGCTGTGGTTGTTATCAC
TATTCCGATTTCTTACTTTGGTGCTCGCTTCATTATGAGTAAGTCTCAACCTTACTTTAAGCAGCAGGCTGATGCCCTAG
GTACTCTTAACGGTTTTGTTCAGGAAAATCTGACTGGTTTCAATGTGATTAAACTTTTTGGACGTGAGGGTAGATCTTTA
GACGACTTTAAAGAAATTACGGAAGATCTTCAAAAGGTAGGTTTTAAGGCCAATTTCATTTCAGGCCTCATGATGCCTTT
CCTTAATGGTTTATCTGACTTGACCTATCTAATTATTGCCGTCCTAGGTGGTTTGCAAGTCTTGGCTGGTCGCTTGACGA
TTGGTAATATGCAGGCTTTCGTTCAGTACGTTTGGCAGATTAATCAACCTATTCAGAACTTGACTCAGTTGGCTGGACAA
TTGCAGAGTGCTAAATCTTCCTTGGACCGTATTTTCCAACTGATGGATGAACCAGACGAGGCTAATGATGCTACTGAGGT
GCTTGAAGGAGATTTAACTGGTCAAGTTATCTTTAATCATGTGGACTTCCAGTATGTAGCTGATAAACCTTTGATTCGTG
ACTTTAATCTTGAGGTTAATCCTGGTGAAATGGTGGCTATTGTCGGTCCTACCGGTGCTGGAAAATCAACTATTATCAAT
CTTCTCATGCGTTTCTATGATGTTACTGCAGGTTCTATCTCGGTTGATGGTCATGATATACGCAACTTGTCGCGTAAAGA
TTATCGTAAACAGTTTGGTATGGTGCTTCAGGATGCTTGGCTCTTTGAAGGAACTATCAAGGAAAATCTTCGTTTTGGTA
ATCTTGAGGCAACTGATGAAGAAATTGTTGAGGCAGCGAAGGCTGCCAATGTGGATCACTTTATCCGTACGCTGCCTGGT
GGCTACAACATGGAAATAAACCAGGAATCAAGTAACATTTCACTGGGACAAAAGCAACTTTTGACCATAGCCCGTGCACT
TTTGGCTGACCCTAAAATCTTGATTTTGGACGAGGCAACCTCATCAGTTGATACCCGTCTGGAACTCTTGATTCAAAAAG
CCATGAAGACACTTATGCAAGGCCGAACAAGTTTTGTCATCGCTCACCGTTTATCAACAATCCAAGAAGCAGACAAGATT
TTGTTCCTTAAAGATGGACAAATCATCGAACAAGGGAACCATGAATCCCTCCTTGCAGATAAAGGTTTCTATTACGATTT
GTATAATAGTCAATTTGCAGAGAAATAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(29-310)

ABC transporter (ABC_tran)

(373-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

42.353

100

0.424

Multiple sequence alignment