Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   BEN15_RS05840 Genome accession   NZ_CP016877
Coordinates   1089838..1091574 (+) Length   578 a.a.
NCBI ID   WP_065972994.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain KLDS 3.1003     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1084838..1096574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BEN15_RS05800 (BEN15_05795) - 1085494..1086252 (+) 759 WP_065972991.1 class I SAM-dependent methyltransferase -
  BEN15_RS11680 - 1086723..1086872 (+) 150 WP_231107121.1 hypothetical protein -
  BEN15_RS05810 (BEN15_05805) - 1087112..1087357 (+) 246 WP_065972992.1 ABC transporter substrate-binding protein -
  BEN15_RS11685 - 1087350..1087829 (+) 480 WP_231107122.1 ABC transporter permease -
  BEN15_RS11990 (BEN15_05815) - 1087889..1088119 (+) 231 WP_155758743.1 ABC transporter permease -
  BEN15_RS11995 (BEN15_05820) - 1088177..1088392 (+) 216 WP_065972993.1 ABC transporter permease -
  BEN15_RS05830 (BEN15_05825) rplJ 1088683..1089186 (+) 504 WP_011225635.1 50S ribosomal protein L10 -
  BEN15_RS05835 (BEN15_05830) rplL 1089261..1089629 (+) 369 WP_002950038.1 50S ribosomal protein L7/L12 -
  BEN15_RS05840 (BEN15_05835) rcrP 1089838..1091574 (+) 1737 WP_065972994.1 ABC transporter ATP-binding protein Regulator
  BEN15_RS05845 (BEN15_05840) rcrQ 1091587..1093374 (+) 1788 WP_065972995.1 ABC transporter ATP-binding protein Regulator
  BEN15_RS05850 (BEN15_05845) queA 1093472..1094515 (-) 1044 WP_065972996.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  BEN15_RS05855 (BEN15_05850) - 1094665..1095366 (+) 702 WP_065972997.1 glucosamine-6-phosphate deaminase -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 64642.62 Da        Isoelectric Point: 6.2085

>NTDB_id=165058 BEN15_RS05840 WP_065972994.1 1089838..1091574(+) (rcrP) [Streptococcus thermophilus strain KLDS 3.1003]
MAYIWSYLRRYPKWLAMNFTAAILFVIANLGMPTVLARMIDEGINRGDADKLYTYAWVMFGVVLTGIVGRVLLAYAVGKL
TTTMVQVMRNDIYAKLQEYSHHEYEQIGVSSLVTRITSDAFVLMQFADQVLKVGVITPLMMVSSVFLILTTSPSLAWIVA
ISLPLLAVVVWYVAVKTRPLSEKQQATLDKINQYARENLTGLRVIRAFAREDFQEKKFASENAVYADNSSKLFKLTGLTE
PLFVQIIIAMIVAIVWFALNPLGSGALAIGDLVAFIEYSFHALLSFLFLANLFTMYPRTAVSSERLQEIMDMPISINPNE
DGVTETDTKGYLEFDNVTFAYPGKTESPVLHNISFKAKAGETIAFIGSTGSGKSSLVQLIPRFYDVTLGRILVDGVDVRD
YNLKALRRKIGFIPQKALLFTGTIGENIRYGKENASHEELNQATDVAQAKEFIESKEERYDSHLAEGGSNLSGGQKQRLS
IARAVVKRPDIYIFDDSFSALDYKTDATLRRRLKEVTQDATVLIVAQRVGTIMDADQIIVLDKGEIVGRGRHEELMESNE
IYREIANSQLNQKSLTED

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=165058 BEN15_RS05840 WP_065972994.1 1089838..1091574(+) (rcrP) [Streptococcus thermophilus strain KLDS 3.1003]
ATGGCTTATATTTGGTCTTATCTCAGACGTTATCCCAAGTGGCTAGCGATGAATTTTACGGCAGCCATTTTATTTGTTAT
TGCTAACCTGGGTATGCCGACGGTTCTTGCTAGAATGATTGATGAGGGAATTAACCGTGGGGATGCTGACAAGCTTTATA
CCTATGCTTGGGTCATGTTTGGTGTGGTCTTAACTGGTATTGTTGGTCGTGTGCTTTTGGCCTATGCGGTTGGTAAGTTG
ACGACTACTATGGTGCAGGTCATGCGTAATGATATCTACGCCAAACTTCAGGAGTATTCACACCATGAGTACGAACAAAT
TGGGGTATCTTCTTTGGTGACTCGTATCACGTCGGATGCTTTTGTTCTCATGCAGTTTGCAGATCAAGTCCTCAAGGTGG
GTGTTATCACTCCTTTGATGATGGTTTCCAGTGTCTTTTTGATTTTGACGACAAGTCCATCTTTGGCTTGGATTGTGGCA
ATCTCCTTGCCTTTACTAGCTGTAGTTGTCTGGTATGTGGCGGTAAAAACGCGTCCGCTTTCTGAAAAGCAACAGGCAAC
TCTCGACAAGATTAACCAGTATGCTCGTGAAAATCTGACTGGACTTCGTGTCATCCGTGCTTTCGCTAGAGAAGATTTCC
AAGAGAAGAAGTTTGCCTCTGAAAATGCTGTCTATGCGGATAATTCAAGCAAGCTCTTTAAATTGACTGGTTTAACAGAG
CCACTTTTTGTACAAATCATCATCGCTATGATTGTGGCTATTGTTTGGTTTGCCCTAAATCCATTAGGTTCTGGAGCTCT
GGCAATCGGGGACTTGGTTGCCTTCATTGAGTACAGTTTCCATGCACTATTATCCTTCCTCTTTCTAGCTAATCTCTTTA
CTATGTATCCTCGTACAGCGGTATCTAGTGAACGTCTGCAGGAAATTATGGATATGCCTATTTCTATCAACCCAAATGAA
GATGGGGTGACAGAGACTGATACTAAGGGATATTTGGAATTTGATAATGTGACCTTTGCCTATCCTGGTAAAACTGAGAG
TCCTGTTCTACACAATATTTCTTTTAAGGCTAAGGCAGGTGAGACTATTGCCTTTATTGGGTCTACGGGCTCAGGAAAAT
CATCACTTGTACAGTTGATTCCACGCTTTTATGATGTCACACTTGGACGTATTCTTGTGGATGGTGTGGATGTACGTGAC
TACAATCTTAAGGCTCTTCGTCGTAAGATTGGCTTTATTCCACAAAAAGCTCTACTCTTTACTGGAACTATCGGTGAAAA
TATCCGTTATGGTAAGGAAAATGCTAGTCATGAAGAATTGAATCAAGCTACGGACGTGGCTCAGGCTAAGGAATTTATTG
AAAGCAAGGAAGAACGCTATGATTCTCACTTGGCTGAGGGTGGTAGCAACCTTTCTGGGGGACAGAAGCAGCGTTTGTCA
ATTGCACGTGCGGTGGTTAAACGTCCTGATATCTATATCTTTGATGATTCCTTCTCTGCCTTGGACTACAAGACTGATGC
GACCTTGCGCCGTCGTCTAAAAGAAGTGACTCAGGATGCGACAGTCTTGATCGTGGCTCAACGTGTGGGAACCATTATGG
ATGCAGATCAGATTATCGTTCTTGATAAGGGTGAAATTGTTGGTCGTGGCCGTCACGAAGAGCTCATGGAAAGTAATGAG
ATTTACCGTGAGATTGCTAATTCACAATTGAATCAAAAGAGTCTTACGGAAGACTAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(350-497)

ABC transporter transmembrane region (ABC_membrane)

(17-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.566

91.696

0.372

Multiple sequence alignment