Detailed information NTG0165024

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: BEN15_RS02980
• Genome accession: NZ_CP016877
• Coordinates: 573152..574252 (+)
• Length: 366 a.a.
• NCBI ID: WP_002947786.1
• Uniprot ID: Q5LXI7
• Organism: Streptococcus thermophilus strain KLDS 3.1003
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 568152..579252

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BEN15_RS02955 (BEN15_02955)	pgsA	568694..569236 (-)	543	WP_065972709.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
BEN15_RS02960 (BEN15_02960)	-	569249..570106 (-)	858	WP_065972711.1	helix-turn-helix domain-containing protein	-
BEN15_RS02965 (BEN15_02965)	yfmH	570165..571442 (-)	1278	WP_065972713.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
BEN15_RS02970 (BEN15_02970)	yfmF	571444..572694 (-)	1251	WP_065972715.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
BEN15_RS02975 (BEN15_02975)	yaaA	572772..573149 (+)	378	WP_065972716.1	S4 domain-containing protein YaaA	-
BEN15_RS02980 (BEN15_02980)	recF	573152..574252 (+)	1101	WP_002947786.1	DNA replication/repair protein RecF	Machinery gene
BEN15_RS02985 (BEN15_02985)	guaB	574421..575902 (-)	1482	WP_002952289.1	IMP dehydrogenase	-
BEN15_RS02990 (BEN15_02990)	trpS	576079..577101 (-)	1023	WP_002952292.1	tryptophan--tRNA ligase	-
BEN15_RS02995 (BEN15_02995)	-	577529..578401 (+)	873	WP_065972717.1	YitT family protein	-

Sequence

Protein

• Length: 366 a.a.
• Molecular weight: 42173.29 Da
• Isoelectric Point: 8.3913

>NTDB_id=165024 BEN15_RS02980 WP_002947786.1 573152..574252(+) (recF) [Streptococcus thermophilus strain KLDS 3.1003]
MWLEKIDIQHFRNYSEASVSFSPHLNIFLGRNAQGKTNILEAIYFLALTRSHRTHLDKELIQFQQNSLKLNGIVHRHSGN
LPLEINLSNKGRVTKVNYLKQAKLSDYIGHMTVVLFAPEDLQLVKGSPSLRRKFIDIDLGQIKPVYLSDLSNYNHVLKQR
NAYLKSTDKVDINFLSVLDEQLADFGARVIKHRLEFIKQLEEEADGHHSILSNQIERLKISYESNIPIQNSKDIREAFLT
TLNQNHKRDIFKKNTGVGPHRDDLKFYINDMNASFGSQGQQRSLILSLKMAEIALIKKVTEEFPILLLDDVMSELDNHRQ
LKLLESIDEEVQTFMTTTSLDHLSNLPPNLKTFLVKNGTIYEKQVD

Nucleotide

• Length: 1101 bp

>NTDB_id=165024 BEN15_RS02980 WP_002947786.1 573152..574252(+) (recF) [Streptococcus thermophilus strain KLDS 3.1003]
ATGTGGCTTGAAAAAATTGATATTCAACACTTTAGAAATTATTCTGAAGCCTCTGTGAGCTTTTCACCACATCTCAATAT
TTTTCTTGGACGAAATGCCCAAGGAAAAACAAATATTCTTGAAGCTATCTATTTTCTAGCCTTAACACGTAGTCATCGGA
CCCATTTAGACAAGGAACTAATTCAGTTCCAGCAAAATAGTCTTAAACTAAACGGCATCGTGCATCGTCATAGTGGAAAC
CTACCTCTGGAAATCAACTTATCTAATAAGGGACGAGTTACAAAGGTCAACTACCTCAAGCAGGCAAAATTATCTGATTA
TATAGGTCACATGACGGTGGTACTCTTTGCTCCTGAGGATTTACAACTTGTAAAAGGATCTCCAAGTCTAAGACGTAAAT
TTATAGATATTGATTTAGGACAGATTAAGCCTGTTTACCTCTCAGACCTATCAAATTACAATCATGTTCTTAAGCAGCGT
AATGCCTATCTCAAATCTACTGACAAGGTAGACATTAATTTCCTCTCAGTTTTAGATGAACAGCTTGCCGATTTTGGAGC
ACGAGTTATTAAACATAGACTAGAATTTATCAAGCAATTAGAAGAGGAAGCTGATGGACATCATAGTATTCTCTCAAATC
AGATTGAGCGTCTTAAAATTTCCTATGAATCTAACATCCCAATACAAAATAGCAAAGATATTCGAGAAGCATTTTTAACT
ACATTAAACCAGAATCACAAAAGAGATATCTTCAAAAAGAATACCGGTGTTGGTCCACATAGGGATGATTTAAAATTTTA
CATTAATGACATGAACGCATCTTTCGGTAGTCAAGGGCAGCAACGTAGCCTTATTCTTTCATTAAAAATGGCTGAGATTG
CTCTAATTAAAAAAGTGACAGAGGAATTTCCTATTCTTCTCCTTGACGATGTCATGAGTGAACTTGACAATCACCGTCAA
CTTAAATTGCTAGAAAGTATTGATGAAGAGGTCCAAACTTTCATGACTACAACCTCACTCGATCATCTTAGCAACCTACC
ACCCAATTTAAAGACCTTCTTAGTTAAGAATGGTACTATTTATGAAAAGCAAGTCGATTAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-358)

3D structure

• AlphaFold DB: Q5LXI7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	65.642	97.814	0.642
recF	Bacillus subtilis subsp. subtilis str. 168	42.935	100	0.432