Detailed information NTG0164974

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: BE846_RS12695
• Genome accession: NZ_CP016876
• Coordinates: 2826720..2827745 (+)
• Length: 341 a.a.
• NCBI ID: WP_011213596.1
• Uniprot ID: -
• Organism: Legionella pneumophila subsp. pneumophila strain FFI337
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2821720..2832745

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BE846_RS12665 (BE846_12665)	-	2822150..2822467 (+)	318	WP_011215326.1	DUF2845 domain-containing protein	-
BE846_RS12670 (BE846_12670)	-	2822505..2822876 (+)	372	WP_070322067.1	protease inhibitor I42 family protein	-
BE846_RS12675 (BE846_12675)	-	2822933..2824648 (-)	1716	WP_070322066.1	NAD-dependent malic enzyme	-
BE846_RS12680 (BE846_12680)	-	2824728..2825111 (+)	384	WP_011215329.1	hypothetical protein	-
BE846_RS12685 (BE846_12685)	surE	2825114..2825872 (+)	759	WP_011215330.1	5'/3'-nucleotidase SurE	-
BE846_RS12690 (BE846_12690)	-	2825891..2826634 (+)	744	WP_070322065.1	peptidoglycan DD-metalloendopeptidase family protein	-
BE846_RS12695 (BE846_12695)	rpoS	2826720..2827745 (+)	1026	WP_011213596.1	RNA polymerase sigma factor RpoS	Regulator
BE846_RS12700 (BE846_12700)	hmgA	2827848..2829098 (-)	1251	WP_011215332.1	homogentisate 1,2-dioxygenase	-
BE846_RS12705 (BE846_12705)	-	2829245..2829988 (+)	744	WP_070322064.1	YebC/PmpR family DNA-binding transcriptional regulator	-
BE846_RS12710 (BE846_12710)	ruvC	2829988..2830512 (+)	525	WP_011215334.1	crossover junction endodeoxyribonuclease RuvC	-
BE846_RS12715 (BE846_12715)	ruvA	2830509..2831108 (+)	600	WP_011213600.1	Holliday junction branch migration protein RuvA	-
BE846_RS12720 (BE846_12720)	-	2831159..2831479 (+)	321	WP_070322063.1	hypothetical protein	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 39433.70 Da
• Isoelectric Point: 4.3732

>NTDB_id=164974 BE846_RS12695 WP_011213596.1 2826720..2827745(+) (rpoS) [Legionella pneumophila subsp. pneumophila strain FFI337]
MQDEEEPIKDKEFKEEEWSEPDDDSLLSEEDIEPDIEKMEEELDELPEFTDDEAFPSFQRGKNIAKALDATQLYLGEIGF
SPLLTAEEEIHYATLALKGDMEARKKMIESNLRLVVKIARRYLNRGLPLLDLIEEGNLGLMKSVEKFDPKRGFRFSTYAT
WWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRAARQLTQKLDHEPSPEEIAEMVDKPLEDVQKLLGLNDKVASVDTPIG
FDETKSLLDTIADENSLNPAELLTNENLRQHIESLLDKLTENQQQVIARRFGLRGFEKATLEDVGKEIDLTRERVRQIQV
EALKTLRTLLERVGLTQEDLF

Nucleotide

• Length: 1026 bp

>NTDB_id=164974 BE846_RS12695 WP_011213596.1 2826720..2827745(+) (rpoS) [Legionella pneumophila subsp. pneumophila strain FFI337]
ATGCAAGATGAAGAAGAGCCAATTAAGGACAAGGAATTTAAAGAAGAGGAATGGTCTGAGCCAGATGATGACTCTCTGTT
GTCAGAAGAGGATATTGAACCTGATATCGAAAAAATGGAAGAAGAGCTTGATGAACTTCCAGAGTTTACTGATGATGAAG
CTTTTCCTTCATTCCAGCGCGGGAAAAATATTGCCAAGGCTTTAGATGCGACTCAACTTTACTTGGGTGAAATTGGTTTT
TCTCCTTTGCTAACGGCTGAAGAAGAAATCCATTATGCGACTCTTGCTTTAAAAGGTGATATGGAAGCACGCAAGAAAAT
GATTGAGTCGAATTTGCGCCTGGTGGTTAAAATAGCCAGACGTTATCTTAATAGAGGCTTACCTCTTCTGGATCTAATCG
AAGAGGGTAACCTGGGTTTAATGAAGTCTGTTGAGAAATTTGACCCCAAGCGAGGATTCCGTTTTTCAACTTATGCGACC
TGGTGGATTAGGCAAACTATTGAGCGCGCAATTATGAATCAAACGAGAACTATCCGCCTGCCTATTCATGTCGTGAAAGA
ACTTAATGTATATCTCAGAGCGGCAAGACAATTGACGCAAAAACTGGATCATGAACCATCACCGGAAGAAATAGCGGAAA
TGGTGGATAAGCCTTTGGAGGATGTCCAAAAATTATTGGGTTTGAATGATAAAGTCGCCTCGGTTGATACTCCAATTGGA
TTTGATGAAACCAAATCTTTATTAGATACAATTGCTGATGAAAACAGTTTAAATCCTGCAGAGCTGCTAACCAACGAGAA
TTTAAGGCAGCATATAGAATCTCTTCTGGATAAATTAACTGAGAATCAACAGCAGGTTATCGCAAGACGTTTTGGGTTAA
GAGGTTTTGAAAAAGCGACACTGGAAGACGTTGGTAAAGAAATTGATTTGACCCGAGAACGCGTTCGCCAAATTCAAGTT
GAAGCTTTGAAGACACTTAGAACTTTGTTAGAGCGGGTTGGACTAACACAAGAGGATTTGTTTTGA

Domains

Predicted by InterProScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (69-101)

• Sigma-70 region 3 (Sigma70_r3) (187-261)

• Sigma-70 region 2 (Sigma70_r2) (107-176)

• Sigma-70, region 4 (Sigma70_r4) (275-327)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	67.509	81.232	0.548