Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   FORC18_RS19220 Genome accession   NZ_CP013827
Coordinates   743109..744290 (-) Length   393 a.a.
NCBI ID   WP_029839421.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain FORC_018     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 738109..749290
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC18_RS19205 (FORC18_3587) - 739412..739960 (+) 549 WP_047732410.1 GNAT family N-acetyltransferase -
  FORC18_RS19210 (FORC18_3588) - 740046..740663 (-) 618 WP_005481262.1 HAD family hydrolase -
  FORC18_RS19215 (FORC18_3589) cqsS 740983..743031 (+) 2049 WP_021450907.1 response regulator Regulator
  FORC18_RS19220 (FORC18_3590) cqsA 743109..744290 (-) 1182 WP_029839421.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  FORC18_RS19225 (FORC18_3591) ylqF 744644..745588 (-) 945 WP_005454328.1 ribosome biogenesis GTPase YlqF -
  FORC18_RS19230 (FORC18_3592) - 745878..746615 (-) 738 WP_025520389.1 EAL domain-containing protein -
  FORC18_RS19235 (FORC18_3593) - 746793..749033 (-) 2241 WP_053048051.1 M9 family metallopeptidase -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43810.11 Da        Isoelectric Point: 6.4984

>NTDB_id=164922 FORC18_RS19220 WP_029839421.1 743109..744290(-) (cqsA) [Vibrio parahaemolyticus strain FORC_018]
MCTKNETKPLPSFIEERLNFHIQDLIKSNENQKHLVLGKRPSENAVVMQSNDYLSLSHNELIQKAHRDAISERDDNVVMS
AIFLQDDQSKPAFEHQLATFVGMESCLLSQSGWAANIGLLQTICAPNVPVYIDFFAHMSLWEGARTAGAQIHPFMHNNMN
HLRKQIQRHGAGIIVVDSVYSTIGTIAPLRAIYEMAKEFDCGLVVDESHSLGTHGPKGSGLLQELGLTQMVDFVTVSLAK
TFAYRAGAILGPNKLAQSLPFVAYPAIFSSTVLPQEVVRLEKTLEVIKGADDKRECLFKRAKELAIGLKRIGFNIRSESQ
IIALECGSERNTERVRDFLEERDVFGAVFCRPATGRNKNIIRFSVNADMTAQQVDHVLSACQEAFDHPDLEFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=164922 FORC18_RS19220 WP_029839421.1 743109..744290(-) (cqsA) [Vibrio parahaemolyticus strain FORC_018]
ATGTGTACTAAAAACGAAACTAAACCACTGCCCTCTTTTATCGAGGAACGCCTTAATTTCCATATTCAAGATTTAATTAA
ATCTAACGAAAATCAAAAGCACCTCGTTCTTGGCAAACGACCGTCCGAAAATGCTGTGGTTATGCAAAGCAATGATTACC
TTTCGCTCTCTCACAATGAGCTCATTCAGAAAGCGCATCGAGATGCAATTTCTGAACGAGATGACAATGTCGTGATGTCA
GCAATCTTCTTGCAAGATGATCAATCAAAACCGGCCTTTGAGCACCAGCTGGCGACGTTTGTCGGTATGGAAAGTTGTTT
GTTGTCACAATCAGGATGGGCAGCCAATATTGGTTTACTGCAAACCATCTGCGCTCCAAACGTTCCCGTATACATCGACT
TTTTCGCTCATATGTCGTTGTGGGAAGGAGCACGCACCGCTGGAGCGCAGATTCATCCTTTCATGCACAACAACATGAAT
CATCTGCGCAAGCAGATCCAACGCCACGGTGCGGGAATCATCGTTGTCGATTCGGTGTATAGCACGATTGGCACAATCGC
CCCGTTACGTGCCATCTACGAAATGGCGAAGGAGTTTGATTGTGGCTTAGTCGTAGATGAATCCCATTCATTAGGCACAC
ACGGACCAAAGGGGTCTGGATTATTACAAGAACTGGGACTAACACAGATGGTGGATTTCGTTACCGTAAGTTTGGCTAAA
ACGTTCGCCTACCGCGCTGGTGCGATATTAGGCCCGAACAAGCTAGCACAATCACTGCCCTTCGTGGCCTATCCTGCGAT
TTTTAGCTCAACGGTTTTGCCGCAAGAAGTCGTGCGTTTAGAAAAAACACTTGAGGTAATTAAAGGGGCTGACGACAAAC
GTGAATGTTTGTTCAAGCGAGCCAAAGAACTCGCGATCGGATTAAAACGTATTGGGTTTAACATTCGCAGCGAATCGCAG
ATTATTGCTCTTGAGTGTGGAAGTGAGAGAAACACTGAACGAGTACGCGATTTCCTTGAAGAAAGAGACGTTTTCGGTGC
GGTGTTTTGCCGACCTGCCACGGGCAGAAACAAGAACATCATTCGATTTTCTGTCAATGCCGACATGACAGCTCAACAAG
TGGATCACGTCTTATCGGCTTGTCAGGAGGCATTTGACCATCCCGACTTAGAGTTTGTGTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(45-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

58.656

98.473

0.578

Multiple sequence alignment