Detailed information NTG0164913

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: FORC18_RS14445
• Genome accession: NZ_CP013826
• Coordinates: 2991922..2992968 (+)
• Length: 348 a.a.
• NCBI ID: WP_254894148.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain FORC_018
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 2986922..2997968

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FORC18_RS14425 (FORC18_2646)	rplC	2987495..2988124 (-)	630	WP_005456132.1	50S ribosomal protein L3	-
FORC18_RS14430 (FORC18_2647)	rpsJ	2988139..2988450 (-)	312	WP_004410492.1	30S ribosomal protein S10	-
FORC18_RS14435 (FORC18_2648)	rpmE	2988908..2989129 (-)	222	WP_005457203.1	50S ribosomal protein L31	-
FORC18_RS14440 (FORC18_2649)	priA	2989424..2991628 (+)	2205	WP_025622698.1	primosomal protein N'	-
FORC18_RS14445 (FORC18_2650)	cytR	2991922..2992968 (+)	1047	WP_254894148.1	DNA-binding transcriptional regulator CytR	Regulator
FORC18_RS14450 (FORC18_2651)	ftsN	2993143..2993688 (+)	546	WP_005489623.1	cell division protein FtsN	-
FORC18_RS14455 (FORC18_2652)	hslV	2993853..2994404 (+)	552	WP_053047761.1	ATP-dependent protease subunit HslV	-
FORC18_RS14460 (FORC18_2653)	hslU	2994428..2995759 (+)	1332	WP_005489452.1	HslU--HslV peptidase ATPase subunit	-
FORC18_RS14465 (FORC18_2654)	-	2995944..2996861 (+)	918	WP_005457195.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
FORC18_RS14470 (FORC18_2655)	rraA	2996938..2997450 (+)	513	WP_005457192.1	ribonuclease E activity regulator RraA	-
FORC18_RS14475 (FORC18_2656)	zapB	2997555..2997797 (-)	243	WP_005481417.1	cell division protein ZapB	-

Sequence

Protein

• Length: 348 a.a.
• Molecular weight: 38445.17 Da
• Isoelectric Point: 6.7430

>NTDB_id=164913 FORC18_RS14445 WP_254894148.1 2991922..2992968(+) (cytR) [Vibrio parahaemolyticus strain FORC_018]
MTSSWQKFERLNTMATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVP
DICDPYFSEIIRGIEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEF
APELELPTVHIDNLTSAFEAVNYLTQLGHKRIAQISGPDTAVLCQFRQQGYQQALRRAGISKDPQYSVITEFSFDGGAKA
VRKLLELPEPPTAIFCHCDTMAIGAIQEAKRLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLELL
KGHDVHSGSRLLETKLVVRGSAAPPQRA

Nucleotide

• Length: 1047 bp

>NTDB_id=164913 FORC18_RS14445 WP_254894148.1 2991922..2992968(+) (cytR) [Vibrio parahaemolyticus strain FORC_018]
ATAACGTCATCTTGGCAAAAATTTGAGAGGTTAAACACTATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTC
GACAGCTACGGTATCTCGAGCATTAATGAATCCAGAAAAAGTCTCTTCTTCAACAAGAAAAAGAGTCGAAGATGCCGTCC
TTGAAGCGGGCTATTCTCCAAATTCATTAGCGCGTAATCTACGTAGAAACGAATCAAAAACGATTGTTACCATCGTTCCT
GACATCTGTGATCCTTACTTTTCTGAAATCATTCGTGGTATCGAAGACGCCGCAATGGAACATGGCTACCTCGTACTGCT
CGGTGACAGCGGCCAGCAGAAAAAGCGTGAAAGCTCGTTTGTGAATCTAGTGTTCACCAAACAAGCCGATGGCATGTTAC
TGCTTGGCACCGACCTGCCATTTGATGTCAGCAAGCCAGAACAGAAAAACCTGCCACCAATGGTCATGGCTTGTGAGTTT
GCGCCAGAGCTAGAATTACCAACCGTGCACATTGACAACCTAACGTCTGCTTTTGAAGCGGTCAATTACCTAACTCAACT
TGGCCATAAACGCATAGCACAAATTTCAGGGCCAGACACAGCGGTATTGTGTCAGTTCCGCCAGCAAGGTTATCAACAAG
CCTTGCGTCGCGCGGGGATCAGTAAAGACCCACAATACAGCGTTATCACTGAGTTTTCTTTTGACGGCGGCGCGAAAGCT
GTACGTAAGTTGCTAGAACTTCCAGAGCCACCAACTGCGATTTTCTGCCACTGTGACACCATGGCAATCGGCGCAATCCA
AGAAGCGAAACGACTCGGTCTGCGCGTTCCGCAAGATCTGTCAGTGGTTGGTTTCGATGATATCAACTTTGCTCAATACT
GCGATCCACCGTTAACGACCATTTCTCAACCTCGTTATGAAATTGGCCGCCAAGCGATGCTTATGATGCTTGAACTCCTT
AAAGGCCATGACGTTCATTCAGGTTCACGCTTACTAGAAACTAAGCTTGTTGTCCGTGGTAGCGCAGCGCCACCGCAACG
CGCCTAA

Domains

Predicted by InterproScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (181-341)

• Bacterial regulatory proteins, lacI family (LacI) (16-61)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	100	100	1
cytR	Vibrio cholerae C6706	90.719	95.977	0.871