Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   FORC18_RS09385 Genome accession   NZ_CP013826
Coordinates   1897791..1899212 (+) Length   473 a.a.
NCBI ID   WP_005454911.1    Uniprot ID   A0A0L8TA80
Organism   Vibrio parahaemolyticus strain FORC_018     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1892791..1904212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC18_RS09365 (FORC18_1681) - 1892851..1893603 (-) 753 WP_031792000.1 adenosylcobinamide-GDP ribazoletransferase -
  FORC18_RS09370 (FORC18_1682) cobT 1893648..1894691 (-) 1044 WP_053047511.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  FORC18_RS09375 (FORC18_1683) - 1895374..1896069 (+) 696 WP_053047513.1 NAD(P)H-binding protein -
  FORC18_RS09380 (FORC18_1684) - 1896262..1897635 (+) 1374 WP_053047516.1 L-cystine transporter -
  FORC18_RS09385 (FORC18_1685) sbcB 1897791..1899212 (+) 1422 WP_005454911.1 exodeoxyribonuclease I Machinery gene
  FORC18_RS09390 (FORC18_1686) - 1899268..1899642 (+) 375 WP_005455074.1 CidA/LrgA family protein -
  FORC18_RS09395 (FORC18_1687) - 1899644..1900321 (+) 678 WP_025441999.1 LrgB family protein -
  FORC18_RS09400 (FORC18_1688) cdd 1900686..1901573 (+) 888 WP_025505218.1 cytidine deaminase -
  FORC18_RS09405 (FORC18_1689) purT 1901721..1902896 (+) 1176 WP_053047517.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  FORC18_RS09410 (FORC18_1690) - 1902998..1903648 (-) 651 WP_029804699.1 thiopurine S-methyltransferase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54615.95 Da        Isoelectric Point: 4.9813

>NTDB_id=164904 FORC18_RS09385 WP_005454911.1 1897791..1899212(+) (sbcB) [Vibrio parahaemolyticus strain FORC_018]
MHQDNQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQLPADYLPSPEAALITGITPQKAMQEGLSEP
EFIAKIHAELSKPKTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFT
SFKLEHLSVKNGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRHKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSTEELHERLYTKREDLGDLLPVPVKLVHLNKCPILAPAKTLTAENAEN
IGIDRQKCLDNLALLRQHPEIREKLIGLFSIERQFEKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARNFPGTLDEQEQRRWALHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=164904 FORC18_RS09385 WP_005454911.1 1897791..1899212(+) (sbcB) [Vibrio parahaemolyticus strain FORC_018]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTCTTTGACTACGAGACTTGGGGTACAAATCCCGCGAAAGATCGTCCAAG
CCAATTTGCTGGTGTTCGCACAGATGAAAACTTCAATATCATCGGCGAACCTCTGGTGATGTACTGCCAGCTTCCTGCTG
ATTATCTACCTTCTCCGGAAGCCGCATTAATTACGGGTATTACGCCGCAAAAGGCGATGCAAGAAGGCCTATCTGAGCCT
GAGTTCATTGCTAAGATTCACGCCGAGTTATCGAAACCCAAAACCACCAGCCTAGGCTACAACAGCATTCGCTTTGATGA
CGAAGTGACGCGTTACACCTGTTACCGCAACTTTATCGACCCATACGCGTGGAGTTGGCAAAACGGCAACTCGCGTTGGG
ACTTGCTCGATGTATTGCGTGCATGCCATGCGTTGCGTCCTGAAGGCGTAGAATGGCCAGAGAATGAAGACGGCTTCACC
AGTTTCAAGTTAGAACATTTATCGGTTAAAAATGGCATTGAGCACAGTAATGCGCACGACGCGATGGCAGACGTTATCGC
AACGATTGAGATGGCAAAGAAAGTCAAAGCCGCACAGCCAAAGCTGTTTGATTACTTCTTCTCTATGCGCCATAAACGTA
AGCTGAATGAACTGGTTGATATTGTAAACATGACACCGCTGATGCATGTCTCAGGCATGTTAGGTCGCGAATGCCAATAC
ACCAGCTGGATTGTGCCTGTCGCGTGGCATCCAACGAATAACAACGCGGTTATTACGATTGATTTAGCCAAAGATCCGCA
GCCAATTCTTGAACTTTCAACCGAAGAGTTGCACGAACGTCTCTACACCAAGCGTGAAGACCTCGGCGACCTACTACCCG
TACCGGTGAAACTGGTTCACCTCAATAAGTGCCCTATTTTAGCACCAGCGAAAACGTTGACGGCGGAAAACGCAGAAAAC
ATCGGCATTGATCGTCAGAAGTGTCTCGATAATTTGGCACTACTTCGCCAGCACCCTGAGATTAGAGAAAAACTAATCGG
CTTGTTCTCTATCGAGCGTCAATTTGAAAAAAGCGATGATGTGGACACTCAACTTTACGATGGCTTCTTCTCTCCAGCCG
ACCGTGCAGCGATGGATATTATCCGCGAAACCGATCCAAACAATCTTGCTGCCTTAGATATCGAGTTTGACGATAAACGC
ATCAAACCGCTGCTATTCAGATACCGTGCTCGTAACTTCCCAGGCACTCTCGATGAGCAAGAGCAACGACGCTGGGCACT
TCATTGCCGAGAGGTATTTGAAAGCCAAATCGAAGAGTATATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATTGCAATATTAAAATCCGTTTACCGTTATGTAGAGAGCCTAGCCTCCTAA

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(11-190)

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0L8TA80

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.915

100

0.799

Multiple sequence alignment