Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   FORC18_RS02910 Genome accession   NZ_CP013826
Coordinates   578096..578614 (+) Length   172 a.a.
NCBI ID   WP_005462534.1    Uniprot ID   Q87LS4
Organism   Vibrio parahaemolyticus strain FORC_018     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 573096..583614
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC18_RS02900 (FORC18_0474) gshA 575831..577399 (+) 1569 WP_015297257.1 glutamate--cysteine ligase -
  FORC18_RS02905 (FORC18_0475) - 577424..578029 (+) 606 WP_180819587.1 hypothetical protein -
  FORC18_RS02910 (FORC18_0476) luxS 578096..578614 (+) 519 WP_005462534.1 S-ribosylhomocysteine lyase Regulator
  FORC18_RS02915 (FORC18_0477) - 578675..579955 (-) 1281 WP_005462557.1 HlyC/CorC family transporter -
  FORC18_RS02920 (FORC18_0478) - 580081..580875 (-) 795 WP_005462565.1 cytochrome C assembly family protein -
  FORC18_RS02925 (FORC18_0479) ffh 581088..582467 (+) 1380 WP_025588708.1 signal recognition particle protein -
  FORC18_RS02930 (FORC18_0480) rpsP 582677..582925 (+) 249 WP_005379962.1 30S ribosomal protein S16 -
  FORC18_RS02935 (FORC18_0481) rimM 582954..583502 (+) 549 WP_005462552.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19033.73 Da        Isoelectric Point: 4.7134

>NTDB_id=164895 FORC18_RS02910 WP_005462534.1 578096..578614(+) (luxS) [Vibrio parahaemolyticus strain FORC_018]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWLASMEDVLKVESQNKIPELNEYQCGTAAMHSLEEAQQIAKNILAAGVSVNKNDELA
LPESMLKELRVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=164895 FORC18_RS02910 WP_005462534.1 578096..578614(+) (luxS) [Vibrio parahaemolyticus strain FORC_018]
ATGCCTTTACTCGATAGCTTCACCGTAGACCACACTCGCATGAATGCGCCAGCAGTGCGTGTCGCGAAAACCATGCAAAC
TCCAAAAGGAGATACCATTACGGTTTTCGACTTACGCTTCACTGCGCCTAACAAAGACATTCTTTCAGAGAAAGGCATTC
ATACACTAGAGCACTTGTACGCAGGTTTCATGCGCAATCACCTAAATGGTGACAGTGTGGAAATCATTGATATCTCCCCG
ATGGGATGTCGCACTGGTTTTTACATGAGTCTCATTGGTACGCCTTCTGAACAGCAAGTTGCAGACGCATGGCTTGCTTC
TATGGAAGATGTGCTAAAAGTGGAAAGCCAGAACAAAATCCCTGAGCTAAATGAGTACCAGTGTGGTACTGCAGCGATGC
ATTCTTTAGAAGAAGCACAGCAAATTGCCAAGAACATTCTAGCCGCAGGTGTGTCTGTTAATAAAAACGACGAGTTGGCT
TTGCCAGAATCAATGCTAAAAGAGCTGCGCGTAGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87LS4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

88.889

99.419

0.884

Multiple sequence alignment