Detailed information NTG0164892

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: FORC18_RS02780
• Genome accession: NZ_CP013826
• Coordinates: 555510..556499 (+)
• Length: 329 a.a.
• NCBI ID: WP_005478537.1
• Uniprot ID: A8D8R0
• Organism: Vibrio parahaemolyticus strain FORC_018
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 550510..561499

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FORC18_RS02745 (FORC18_0453)	ftsB	550518..550799 (+)	282	WP_031849042.1	cell division protein FtsB	-
FORC18_RS02750 (FORC18_0454)	ispD	550801..551505 (+)	705	WP_005478544.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
FORC18_RS02755 (FORC18_0455)	ispF	551523..551999 (+)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
FORC18_RS02760 (FORC18_0456)	truD	552046..553089 (+)	1044	WP_053046852.1	tRNA pseudouridine(13) synthase TruD	-
FORC18_RS02765 (FORC18_0457)	surE	553089..553865 (+)	777	WP_005478553.1	5'/3'-nucleotidase SurE	-
FORC18_RS02770 (FORC18_0458)	-	553865..554491 (+)	627	WP_005455562.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
FORC18_RS02775 (FORC18_0459)	-	554506..555429 (+)	924	WP_005455560.1	peptidoglycan DD-metalloendopeptidase family protein	-
FORC18_RS02780 (FORC18_0460)	rpoS	555510..556499 (+)	990	WP_005478537.1	RNA polymerase sigma factor RpoS	Regulator
FORC18_RS02785 (FORC18_0461)	mutS	556578..559139 (-)	2562	WP_025579176.1	DNA mismatch repair protein MutS	-
FORC18_RS02790 (FORC18_0462)	pncC	559224..559706 (+)	483	WP_053046854.1	nicotinamide-nucleotide amidase	-
FORC18_RS02795 (FORC18_0463)	recA	559907..560950 (+)	1044	WP_005478550.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37560.38 Da
• Isoelectric Point: 4.6096

>NTDB_id=164892 FORC18_RS02780 WP_005478537.1 555510..556499(+) (rpoS) [Vibrio parahaemolyticus strain FORC_018]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=164892 FORC18_RS02780 WP_005478537.1 555510..556499(+) (rpoS) [Vibrio parahaemolyticus strain FORC_018]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAAGAAGTTCTTTACGCCCGCAGAGCATTG
CGTGGTGATGAAGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGTTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTCGAAGATGTCAGCAAAATGTTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCAAACAACTCT
GATCCAGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCACGCCGTTTTGGTTTGCTTGGTTATGAGCCGTCTACGCTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CCCGTGAGCGTGTACGTCAAATTCAAGTTGAGGGTTTACGTCGACTTCGTGAAATCCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTCGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

3D structure

• AlphaFold DB: A8D8R0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.851