Detailed information NTG0164849

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: BE844_RS14945
• Genome accession: NZ_CP016873
• Coordinates: 3331179..3332204 (+)
• Length: 341 a.a.
• NCBI ID: WP_011213596.1
• Uniprot ID: -
• Organism: Legionella pneumophila subsp. pneumophila strain FFI105
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3326179..3337204

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BE844_RS14915 (BE844_14915)	-	3326609..3326926 (+)	318	WP_011215326.1	DUF2845 domain-containing protein	-
BE844_RS14920 (BE844_14920)	-	3326964..3327335 (+)	372	WP_070322067.1	protease inhibitor I42 family protein	-
BE844_RS14925 (BE844_14925)	-	3327392..3329107 (-)	1716	WP_070322066.1	NAD-dependent malic enzyme	-
BE844_RS14930 (BE844_14930)	-	3329187..3329570 (+)	384	WP_011215329.1	hypothetical protein	-
BE844_RS14935 (BE844_14935)	surE	3329573..3330331 (+)	759	WP_011215330.1	5'/3'-nucleotidase SurE	-
BE844_RS14940 (BE844_14940)	-	3330350..3331093 (+)	744	WP_070322065.1	peptidoglycan DD-metalloendopeptidase family protein	-
BE844_RS14945 (BE844_14945)	rpoS	3331179..3332204 (+)	1026	WP_011213596.1	RNA polymerase sigma factor RpoS	Regulator
BE844_RS14950 (BE844_14950)	hmgA	3332307..3333557 (-)	1251	WP_011215332.1	homogentisate 1,2-dioxygenase	-
BE844_RS14955 (BE844_14955)	-	3333704..3334447 (+)	744	WP_070322064.1	YebC/PmpR family DNA-binding transcriptional regulator	-
BE844_RS14960 (BE844_14960)	ruvC	3334447..3334971 (+)	525	WP_011215334.1	crossover junction endodeoxyribonuclease RuvC	-
BE844_RS14965 (BE844_14965)	ruvA	3334968..3335567 (+)	600	WP_011213600.1	Holliday junction branch migration protein RuvA	-
BE844_RS14970 (BE844_14970)	-	3335618..3335938 (+)	321	WP_070322063.1	hypothetical protein	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 39433.70 Da
• Isoelectric Point: 4.3732

>NTDB_id=164849 BE844_RS14945 WP_011213596.1 3331179..3332204(+) (rpoS) [Legionella pneumophila subsp. pneumophila strain FFI105]
MQDEEEPIKDKEFKEEEWSEPDDDSLLSEEDIEPDIEKMEEELDELPEFTDDEAFPSFQRGKNIAKALDATQLYLGEIGF
SPLLTAEEEIHYATLALKGDMEARKKMIESNLRLVVKIARRYLNRGLPLLDLIEEGNLGLMKSVEKFDPKRGFRFSTYAT
WWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRAARQLTQKLDHEPSPEEIAEMVDKPLEDVQKLLGLNDKVASVDTPIG
FDETKSLLDTIADENSLNPAELLTNENLRQHIESLLDKLTENQQQVIARRFGLRGFEKATLEDVGKEIDLTRERVRQIQV
EALKTLRTLLERVGLTQEDLF

Nucleotide

• Length: 1026 bp

>NTDB_id=164849 BE844_RS14945 WP_011213596.1 3331179..3332204(+) (rpoS) [Legionella pneumophila subsp. pneumophila strain FFI105]
ATGCAAGATGAAGAAGAGCCAATTAAGGACAAGGAATTTAAAGAAGAGGAATGGTCTGAGCCAGATGATGACTCTCTGTT
GTCAGAAGAGGATATTGAACCTGATATCGAAAAAATGGAAGAAGAGCTTGATGAACTTCCAGAGTTTACTGATGATGAAG
CTTTTCCTTCATTCCAGCGCGGGAAAAATATTGCCAAGGCTTTAGATGCGACTCAACTTTACTTGGGTGAAATTGGTTTT
TCTCCTTTGCTAACGGCTGAAGAAGAAATCCATTATGCGACTCTTGCTTTAAAAGGTGATATGGAAGCACGCAAGAAAAT
GATTGAGTCGAATTTGCGCCTGGTGGTTAAAATAGCCAGACGTTATCTTAATAGAGGCTTACCTCTTCTGGATCTAATCG
AAGAGGGTAACCTGGGTTTAATGAAGTCTGTTGAGAAATTTGACCCCAAGCGAGGATTCCGTTTTTCAACTTATGCGACC
TGGTGGATTAGGCAAACTATTGAGCGCGCAATTATGAATCAAACGAGAACTATCCGCCTGCCTATTCATGTCGTGAAAGA
ACTTAATGTATATCTCAGAGCGGCAAGACAATTGACGCAAAAACTGGATCATGAACCATCACCGGAAGAAATAGCGGAAA
TGGTGGATAAGCCTTTGGAGGATGTCCAAAAATTATTGGGTTTGAATGATAAAGTCGCCTCGGTTGATACTCCAATTGGA
TTTGATGAAACCAAATCTTTATTAGATACAATTGCTGATGAAAACAGTTTAAATCCTGCAGAGCTGCTAACCAACGAGAA
TTTAAGGCAGCATATAGAATCTCTTCTGGATAAATTAACTGAGAATCAACAGCAGGTTATCGCAAGACGTTTTGGGTTAA
GAGGTTTTGAAAAAGCGACACTGGAAGACGTTGGTAAAGAAATTGATTTGACCCGAGAACGCGTTCGCCAAATTCAAGTT
GAAGCTTTGAAGACACTTAGAACTTTGTTAGAGCGGGTTGGACTAACACAAGAGGATTTGTTTTGA

Domains

Predicted by InterProScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (69-101)

• Sigma-70 region 3 (Sigma70_r3) (187-261)

• Sigma-70 region 2 (Sigma70_r2) (107-176)

• Sigma-70, region 4 (Sigma70_r4) (275-327)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	67.509	81.232	0.548