Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   BE844_RS05925 Genome accession   NZ_CP016873
Coordinates   1344613..1345296 (+) Length   227 a.a.
NCBI ID   WP_011216370.1    Uniprot ID   Q5WTW4
Organism   Legionella pneumophila subsp. pneumophila strain FFI105     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1339613..1350296
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BE844_RS05910 (BE844_05910) - 1341466..1342854 (-) 1389 WP_011216367.1 phosphomannomutase/phosphoglucomutase -
  BE844_RS05915 (BE844_05915) dut 1342855..1343313 (-) 459 WP_011216368.1 dUTP diphosphatase -
  BE844_RS05920 (BE844_05920) coaBC 1343340..1344536 (-) 1197 WP_027265359.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  BE844_RS05925 (BE844_05925) radC 1344613..1345296 (+) 684 WP_011216370.1 RadC family protein Machinery gene
  BE844_RS05935 (BE844_05935) lepB 1345637..1349527 (+) 3891 WP_070322348.1 Dot/Icm T4SS GTPase-activating effector LepB -
  BE844_RS05940 (BE844_05940) thpR 1349651..1350214 (-) 564 WP_011216373.1 RNA 2',3'-cyclic phosphodiesterase -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 25699.31 Da        Isoelectric Point: 6.7654

>NTDB_id=164814 BE844_RS05925 WP_011216370.1 1344613..1345296(+) (radC) [Legionella pneumophila subsp. pneumophila strain FFI105]
MMVAHTAQQLDLREKLLTNGVHSLSDIELLAVFISSGNNKKSCLQLAYELTKHLGNLRNILNADLQSFKSIHGLGEVRYA
QLQAAKEICHRSDFIDLQKEIRLSNTQQTYAFLKKRLRDYKNETFAALFLDNQHRIIAYEELFSGTINTATVYPRPIVER
VLQLNAAALILAHNHPSGLSDASQQDLAITERIRDALDLVDARLLDHIVIGDNEVYSIFAENKWACN

Nucleotide


Download         Length: 684 bp        

>NTDB_id=164814 BE844_RS05925 WP_011216370.1 1344613..1345296(+) (radC) [Legionella pneumophila subsp. pneumophila strain FFI105]
ATGATGGTTGCCCATACAGCGCAACAACTTGACTTGCGCGAAAAATTACTTACTAATGGAGTACATAGCCTCTCTGATAT
CGAATTGTTAGCCGTTTTCATCAGTTCGGGTAACAATAAAAAATCTTGTTTGCAACTAGCCTATGAGCTCACCAAACACT
TGGGAAATTTACGGAATATCCTCAATGCTGATCTGCAAAGCTTTAAATCAATCCATGGATTAGGAGAAGTTCGTTATGCA
CAACTTCAGGCTGCGAAAGAAATATGTCATCGTAGTGATTTCATTGATCTGCAAAAAGAAATCCGGTTATCTAACACTCA
ACAGACTTATGCTTTTTTAAAAAAGCGACTGCGAGACTACAAAAATGAAACTTTTGCCGCACTCTTTCTGGATAACCAAC
ACCGAATCATTGCTTATGAAGAATTATTCTCAGGAACCATCAACACAGCAACAGTCTATCCCAGACCGATTGTAGAACGT
GTATTGCAATTAAATGCTGCTGCTTTAATTCTGGCACATAATCATCCCTCGGGCTTGTCTGATGCAAGCCAGCAAGATCT
AGCCATTACAGAACGCATTCGAGATGCTCTGGACTTGGTAGATGCCCGGTTACTGGATCACATTGTCATTGGGGATAATG
AAGTGTATTCCATTTTTGCTGAGAACAAATGGGCATGTAACTAG

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(13-80)

RadC-like JAB domain (RadC)

(104-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5WTW4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

43.925

94.273

0.414