Detailed information    

insolico Bioinformatically predicted

Overview


Name   priA   Type   Machinery gene
Locus tag   BE843_RS10930 Genome accession   NZ_CP016872
Coordinates   2404709..2406886 (-) Length   725 a.a.
NCBI ID   WP_011216700.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. pneumophila strain FFI104     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 2399709..2411886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BE843_RS10905 (BE843_10905) - 2401460..2402266 (+) 807 WP_011216705.1 sulfite exporter TauE/SafE family protein -
  BE843_RS10910 (BE843_10910) lgt 2402284..2403054 (+) 771 WP_011216704.1 prolipoprotein diacylglyceryl transferase -
  BE843_RS10915 (BE843_10915) thyA 2403051..2403845 (+) 795 WP_011216703.1 thymidylate synthase -
  BE843_RS10920 (BE843_10920) - 2403921..2404211 (+) 291 WP_070322286.1 hypothetical protein -
  BE843_RS10925 (BE843_10925) - 2404320..2404712 (-) 393 WP_011216701.1 acyl-CoA thioesterase -
  BE843_RS10930 (BE843_10930) priA 2404709..2406886 (-) 2178 WP_011216700.1 primosomal protein N' Machinery gene
  BE843_RS10935 (BE843_10935) - 2406887..2407381 (-) 495 WP_011216699.1 6-pyruvoyl trahydropterin synthase family protein -
  BE843_RS10940 (BE843_10940) - 2407384..2408496 (-) 1113 WP_062725102.1 class I SAM-dependent methyltransferase -
  BE843_RS10945 (BE843_10945) - 2408673..2409428 (+) 756 WP_196219762.1 pteridine reductase -
  BE843_RS10950 (BE843_10950) - 2409485..2409844 (+) 360 WP_070322288.1 hypothetical protein -
  BE843_RS10955 (BE843_10955) - 2409903..2410889 (-) 987 WP_070322289.1 tRNA dihydrouridine synthase -
  BE843_RS10960 (BE843_10960) - 2410971..2411414 (+) 444 WP_011216694.1 hypothetical protein -

Sequence


Protein


Download         Length: 725 a.a.        Molecular weight: 81627.01 Da        Isoelectric Point: 9.2839

>NTDB_id=164769 BE843_RS10930 WP_011216700.1 2404709..2406886(-) (priA) [Legionella pneumophila subsp. pneumophila strain FFI104]
MNDIYQVCIPHTNRDCFDYEALDLTPCIGGRVWVPFRNQTRVGIVINKVCDQQTGHSLKKITSIIDEKPLVPEALLELCL
WVGSYYQSPLSEVIPLVIPKKYRLGLPCSLPTEDFYQLNIPVEKAKTLISKKAKKQHELIDFLSRHQKGISKQTLKQHGY
NGAQIAALLACQAINLSQQVTLPTKIPEKLSPPLTLNPEQAVAVASIFEHIHHYQCFLLQGVTGSGKTEVYLHVIAKILE
QGKQVLVLVPEIGLTPQLLSRFTARFNHPITVLHSNLNESERQIAWQLAKENKVKMVIGTRSAVFTPLPNLGLIIIDEEH
DSSLKQMEGVRYSARDTALMRAHLANIPIILGTATPSLETIHNCKQKKYNLLRLTHKAASTTPLHYQLIDLRSQMVQHGL
ALPTLKIIENHLLQQNQVLVFINRRGFAPVLLCHQCGWMVDCKACDSHLTLHKQAGQMICHHCGLTQRIPLFCNNCQSKE
LIPVGSGTQRIYEFLSHQFPDTNVLRIDRDEVRKKNSLNSHLDKINKGEAQLIIGTQMLAKGHHFPRLSLVVVVDADAGF
YNQDFRAIEHLGQLLTQVSGRAGRAEHPGQVLIQTYLPDHPLLNLLIQHGYDEFANALLISRQEAEMPPFQFLAVIRAQG
RTVSKVDQFLKATKDQIQAHPLTVLGPAPAPLPRKANQHRMQLLIKSPSRKVLKSSLTQLREWLTMNKLSNGIRWNVDVD
PMDLS

Nucleotide


Download         Length: 2178 bp        

>NTDB_id=164769 BE843_RS10930 WP_011216700.1 2404709..2406886(-) (priA) [Legionella pneumophila subsp. pneumophila strain FFI104]
ATGAACGATATTTATCAAGTTTGTATCCCCCATACCAATCGAGATTGTTTTGATTACGAAGCCCTGGATTTAACTCCATG
CATTGGCGGAAGAGTATGGGTTCCTTTCCGTAATCAAACCCGAGTGGGCATTGTAATCAATAAAGTTTGTGACCAGCAAA
CGGGCCATTCGTTAAAGAAAATCACTTCAATAATCGATGAGAAACCTCTCGTTCCTGAAGCTCTCTTAGAGCTTTGTCTA
TGGGTAGGAAGCTATTATCAGTCACCATTATCTGAAGTGATTCCTTTGGTAATACCCAAAAAATATCGCCTGGGTTTACC
CTGCTCACTACCTACAGAAGATTTTTATCAATTGAATATACCTGTTGAAAAGGCAAAGACACTCATCTCGAAAAAAGCAA
AAAAACAACATGAGTTGATTGATTTTTTAAGCAGGCACCAGAAAGGGATTTCCAAACAGACCTTAAAACAACATGGCTAC
AACGGAGCTCAAATTGCGGCACTACTTGCTTGTCAAGCCATTAACCTGTCACAGCAAGTTACCTTGCCAACCAAAATTCC
TGAAAAACTCAGTCCACCGCTAACACTCAATCCTGAACAAGCCGTTGCCGTAGCTTCCATTTTCGAACACATCCATCACT
ACCAATGCTTTTTACTGCAAGGTGTTACCGGAAGTGGTAAGACAGAGGTTTATTTGCATGTCATCGCCAAAATATTGGAG
CAAGGCAAACAAGTATTGGTGTTGGTACCAGAAATCGGGTTAACCCCTCAGCTTTTATCTCGTTTTACAGCCCGATTTAA
CCATCCCATAACCGTATTACATTCCAATTTGAATGAATCAGAAAGACAAATTGCCTGGCAGCTGGCAAAAGAGAACAAAG
TTAAAATGGTGATTGGAACTCGTTCTGCCGTTTTTACCCCTCTGCCCAATCTCGGTTTAATTATCATCGATGAAGAGCAT
GACAGTTCGCTCAAACAAATGGAGGGGGTGCGTTATTCTGCGCGAGATACTGCTTTAATGCGTGCTCACCTTGCCAATAT
TCCTATCATTCTTGGTACAGCCACTCCCAGTCTGGAAACCATCCACAACTGCAAACAAAAAAAATATAATTTATTACGCT
TAACGCATAAAGCTGCCTCCACTACACCATTACACTATCAACTGATCGATTTACGATCGCAAATGGTACAGCATGGCTTG
GCTCTCCCAACCCTTAAAATCATAGAAAATCATTTGCTGCAACAAAACCAGGTTCTTGTTTTCATTAACCGACGCGGCTT
TGCCCCAGTGTTACTTTGCCATCAATGTGGATGGATGGTTGATTGCAAAGCATGTGATAGCCATTTAACCTTGCATAAAC
AGGCAGGACAAATGATTTGTCATCATTGCGGATTAACCCAAAGAATACCCTTGTTTTGCAATAACTGCCAAAGCAAGGAA
CTAATCCCCGTAGGATCTGGCACCCAGAGAATTTATGAGTTTTTAAGCCATCAGTTTCCAGATACGAATGTTTTACGAAT
TGACCGAGATGAGGTTCGTAAAAAAAATTCTCTAAACAGCCATTTGGACAAAATTAATAAAGGAGAAGCTCAGCTGATCA
TAGGCACTCAAATGCTAGCCAAGGGACACCATTTCCCCCGCCTATCCCTGGTCGTTGTCGTAGATGCTGATGCGGGCTTT
TACAACCAGGATTTCCGGGCTATTGAACATTTGGGGCAATTATTAACTCAAGTATCTGGACGAGCTGGGCGAGCAGAACA
TCCCGGGCAAGTATTGATTCAAACTTATTTACCTGATCATCCCCTGCTTAATCTACTCATTCAGCATGGGTATGATGAGT
TTGCAAACGCTTTATTAATTTCAAGACAAGAGGCTGAAATGCCCCCTTTTCAGTTTTTAGCGGTCATCAGAGCTCAGGGC
AGAACCGTCAGCAAGGTGGATCAATTCCTAAAAGCAACCAAAGATCAAATTCAGGCTCATCCTCTCACGGTACTGGGTCC
TGCACCAGCTCCTTTGCCACGAAAAGCTAACCAGCATAGGATGCAACTATTAATTAAATCCCCTTCAAGAAAAGTTCTAA
AAAGTTCATTGACGCAATTAAGAGAGTGGTTAACAATGAACAAATTAAGTAATGGCATCCGCTGGAATGTGGATGTTGAT
CCTATGGACTTATCATGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

41.94

100

0.423