Detailed information NTG0164744

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: BE843_RS03840
• Genome accession: NZ_CP016872
• Coordinates: 855331..856356 (-)
• Length: 341 a.a.
• NCBI ID: WP_011213596.1
• Uniprot ID: -
• Organism: Legionella pneumophila subsp. pneumophila strain FFI104
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 850331..861356

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BE843_RS03815 (BE843_03815)	-	851597..851917 (-)	321	WP_070322063.1	hypothetical protein	-
BE843_RS03820 (BE843_03820)	ruvA	851968..852567 (-)	600	WP_011213600.1	Holliday junction branch migration protein RuvA	-
BE843_RS03825 (BE843_03825)	ruvC	852564..853088 (-)	525	WP_011215334.1	crossover junction endodeoxyribonuclease RuvC	-
BE843_RS03830 (BE843_03830)	-	853088..853831 (-)	744	WP_070322064.1	YebC/PmpR family DNA-binding transcriptional regulator	-
BE843_RS03835 (BE843_03835)	hmgA	853978..855228 (+)	1251	WP_011215332.1	homogentisate 1,2-dioxygenase	-
BE843_RS03840 (BE843_03840)	rpoS	855331..856356 (-)	1026	WP_011213596.1	RNA polymerase sigma factor RpoS	Regulator
BE843_RS03845 (BE843_03845)	-	856442..857185 (-)	744	WP_070322065.1	peptidoglycan DD-metalloendopeptidase family protein	-
BE843_RS03850 (BE843_03850)	surE	857204..857962 (-)	759	WP_011215330.1	5'/3'-nucleotidase SurE	-
BE843_RS03855 (BE843_03855)	-	857965..858348 (-)	384	WP_011215329.1	hypothetical protein	-
BE843_RS03860 (BE843_03860)	-	858428..860143 (+)	1716	WP_070322066.1	NAD-dependent malic enzyme	-
BE843_RS03865 (BE843_03865)	-	860200..860571 (-)	372	WP_070322067.1	protease inhibitor I42 family protein	-
BE843_RS03870 (BE843_03870)	-	860609..860926 (-)	318	WP_011215326.1	DUF2845 domain-containing protein	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 39433.70 Da
• Isoelectric Point: 4.3732

>NTDB_id=164744 BE843_RS03840 WP_011213596.1 855331..856356(-) (rpoS) [Legionella pneumophila subsp. pneumophila strain FFI104]
MQDEEEPIKDKEFKEEEWSEPDDDSLLSEEDIEPDIEKMEEELDELPEFTDDEAFPSFQRGKNIAKALDATQLYLGEIGF
SPLLTAEEEIHYATLALKGDMEARKKMIESNLRLVVKIARRYLNRGLPLLDLIEEGNLGLMKSVEKFDPKRGFRFSTYAT
WWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRAARQLTQKLDHEPSPEEIAEMVDKPLEDVQKLLGLNDKVASVDTPIG
FDETKSLLDTIADENSLNPAELLTNENLRQHIESLLDKLTENQQQVIARRFGLRGFEKATLEDVGKEIDLTRERVRQIQV
EALKTLRTLLERVGLTQEDLF

Nucleotide

• Length: 1026 bp

>NTDB_id=164744 BE843_RS03840 WP_011213596.1 855331..856356(-) (rpoS) [Legionella pneumophila subsp. pneumophila strain FFI104]
ATGCAAGATGAAGAAGAGCCAATTAAGGACAAGGAATTTAAAGAAGAGGAATGGTCTGAGCCAGATGATGACTCTCTGTT
GTCAGAAGAGGATATTGAACCTGATATCGAAAAAATGGAAGAAGAGCTTGATGAACTTCCAGAGTTTACTGATGATGAAG
CTTTTCCTTCATTCCAGCGCGGGAAAAATATTGCCAAGGCTTTAGATGCGACTCAACTTTACTTGGGTGAAATTGGTTTT
TCTCCTTTGCTAACGGCTGAAGAAGAAATCCATTATGCGACTCTTGCTTTAAAAGGTGATATGGAAGCACGCAAGAAAAT
GATTGAGTCGAATTTGCGCCTGGTGGTTAAAATAGCCAGACGTTATCTTAATAGAGGCTTACCTCTTCTGGATCTAATCG
AAGAGGGTAACCTGGGTTTAATGAAGTCTGTTGAGAAATTTGACCCCAAGCGAGGATTCCGTTTTTCAACTTATGCGACC
TGGTGGATTAGGCAAACTATTGAGCGCGCAATTATGAATCAAACGAGAACTATCCGCCTGCCTATTCATGTCGTGAAAGA
ACTTAATGTATATCTCAGAGCGGCAAGACAATTGACGCAAAAACTGGATCATGAACCATCACCGGAAGAAATAGCGGAAA
TGGTGGATAAGCCTTTGGAGGATGTCCAAAAATTATTGGGTTTGAATGATAAAGTCGCCTCGGTTGATACTCCAATTGGA
TTTGATGAAACCAAATCTTTATTAGATACAATTGCTGATGAAAACAGTTTAAATCCTGCAGAGCTGCTAACCAACGAGAA
TTTAAGGCAGCATATAGAATCTCTTCTGGATAAATTAACTGAGAATCAACAGCAGGTTATCGCAAGACGTTTTGGGTTAA
GAGGTTTTGAAAAAGCGACACTGGAAGACGTTGGTAAAGAAATTGATTTGACCCGAGAACGCGTTCGCCAAATTCAAGTT
GAAGCTTTGAAGACACTTAGAACTTTGTTAGAGCGGGTTGGACTAACACAAGAGGATTTGTTTTGA

Domains

Predicted by InterProScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (69-101)

• Sigma-70 region 3 (Sigma70_r3) (187-261)

• Sigma-70 region 2 (Sigma70_r2) (107-176)

• Sigma-70, region 4 (Sigma70_r4) (275-327)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	67.509	81.232	0.548