Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   BE842_RS08285 Genome accession   NZ_CP016870
Coordinates   1865531..1866214 (+) Length   227 a.a.
NCBI ID   WP_011216370.1    Uniprot ID   Q5WTW4
Organism   Legionella pneumophila subsp. pneumophila strain FFI103     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1860531..1871214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BE842_RS08270 (BE842_08270) - 1862384..1863772 (-) 1389 WP_011216367.1 phosphomannomutase/phosphoglucomutase -
  BE842_RS08275 (BE842_08275) dut 1863773..1864231 (-) 459 WP_011216368.1 dUTP diphosphatase -
  BE842_RS08280 (BE842_08280) coaBC 1864258..1865454 (-) 1197 WP_011216369.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  BE842_RS08285 (BE842_08285) radC 1865531..1866214 (+) 684 WP_011216370.1 RadC family protein Machinery gene
  BE842_RS08295 (BE842_08295) lepB 1866555..1870439 (+) 3885 WP_011216372.1 Dot/Icm T4SS GTPase-activating effector LepB -
  BE842_RS08300 (BE842_08300) thpR 1870563..1871126 (-) 564 WP_011216373.1 RNA 2',3'-cyclic phosphodiesterase -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 25699.31 Da        Isoelectric Point: 6.7654

>NTDB_id=164696 BE842_RS08285 WP_011216370.1 1865531..1866214(+) (radC) [Legionella pneumophila subsp. pneumophila strain FFI103]
MMVAHTAQQLDLREKLLTNGVHSLSDIELLAVFISSGNNKKSCLQLAYELTKHLGNLRNILNADLQSFKSIHGLGEVRYA
QLQAAKEICHRSDFIDLQKEIRLSNTQQTYAFLKKRLRDYKNETFAALFLDNQHRIIAYEELFSGTINTATVYPRPIVER
VLQLNAAALILAHNHPSGLSDASQQDLAITERIRDALDLVDARLLDHIVIGDNEVYSIFAENKWACN

Nucleotide


Download         Length: 684 bp        

>NTDB_id=164696 BE842_RS08285 WP_011216370.1 1865531..1866214(+) (radC) [Legionella pneumophila subsp. pneumophila strain FFI103]
ATGATGGTTGCCCATACAGCGCAACAACTTGACTTGCGCGAAAAATTACTTACTAATGGAGTACATAGCCTCTCTGATAT
CGAATTGTTAGCCGTTTTCATCAGTTCGGGTAACAATAAAAAATCTTGTTTGCAACTAGCCTATGAGCTCACCAAACACT
TGGGAAATTTACGGAATATCCTCAATGCTGATCTGCAAAGCTTTAAATCAATCCATGGATTAGGAGAAGTTCGTTATGCA
CAACTTCAGGCTGCGAAAGAAATATGTCATCGTAGTGATTTCATTGATCTGCAAAAAGAAATCCGGTTATCTAACACTCA
ACAGACTTATGCTTTTTTAAAAAAGCGACTGCGAGACTACAAAAATGAAACTTTTGCCGCACTCTTTCTGGATAACCAAC
ACCGAATCATTGCTTATGAAGAATTATTCTCAGGAACCATCAACACAGCAACAGTCTATCCCAGACCGATTGTAGAACGT
GTATTGCAATTAAATGCTGCTGCTTTAATTCTGGCACATAATCATCCCTCGGGCTTGTCTGATGCAAGCCAGCAAGATCT
AGCCATTACAGAACGCATTCGAGATGCTCTGGACTTGGTAGATGCCCGGTTACTGGATCACATTGTCATTGGGGATAATG
AAGTGTATTCCATTTTTGCTGAGAACAAATGGGCATGTAACTAG

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(13-80)

RadC-like JAB domain (RadC)

(104-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5WTW4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

43.925

94.273

0.414