Detailed information NTG0164666

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: BE842_RS02140
• Genome accession: NZ_CP016870
• Coordinates: 461471..462496 (+)
• Length: 341 a.a.
• NCBI ID: WP_011213596.1
• Uniprot ID: -
• Organism: Legionella pneumophila subsp. pneumophila strain FFI103
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 456471..467496

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BE842_RS02110 (BE842_02110)	-	456901..457218 (+)	318	WP_011215326.1	DUF2845 domain-containing protein	-
BE842_RS02115 (BE842_02115)	-	457256..457627 (+)	372	WP_011215327.1	protease inhibitor I42 family protein	-
BE842_RS02120 (BE842_02120)	-	457684..459399 (-)	1716	WP_011215328.1	NAD-dependent malic enzyme	-
BE842_RS02125 (BE842_02125)	-	459479..459862 (+)	384	WP_011215329.1	hypothetical protein	-
BE842_RS02130 (BE842_02130)	surE	459865..460623 (+)	759	WP_011215330.1	5'/3'-nucleotidase SurE	-
BE842_RS02135 (BE842_02135)	-	460642..461385 (+)	744	WP_011215331.1	peptidoglycan DD-metalloendopeptidase family protein	-
BE842_RS02140 (BE842_02140)	rpoS	461471..462496 (+)	1026	WP_011213596.1	RNA polymerase sigma factor RpoS	Regulator
BE842_RS02145 (BE842_02145)	hmgA	462599..463849 (-)	1251	WP_011215332.1	homogentisate 1,2-dioxygenase	-
BE842_RS02150 (BE842_02150)	-	463996..464739 (+)	744	WP_011215333.1	YebC/PmpR family DNA-binding transcriptional regulator	-
BE842_RS02155 (BE842_02155)	ruvC	464739..465262 (+)	524	Protein_428	crossover junction endodeoxyribonuclease RuvC	-
BE842_RS02160 (BE842_02160)	ruvA	465259..465858 (+)	600	WP_011213600.1	Holliday junction branch migration protein RuvA	-
BE842_RS02165 (BE842_02165)	-	465909..466229 (+)	321	WP_011215335.1	hypothetical protein	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 39433.70 Da
• Isoelectric Point: 4.3732

>NTDB_id=164666 BE842_RS02140 WP_011213596.1 461471..462496(+) (rpoS) [Legionella pneumophila subsp. pneumophila strain FFI103]
MQDEEEPIKDKEFKEEEWSEPDDDSLLSEEDIEPDIEKMEEELDELPEFTDDEAFPSFQRGKNIAKALDATQLYLGEIGF
SPLLTAEEEIHYATLALKGDMEARKKMIESNLRLVVKIARRYLNRGLPLLDLIEEGNLGLMKSVEKFDPKRGFRFSTYAT
WWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRAARQLTQKLDHEPSPEEIAEMVDKPLEDVQKLLGLNDKVASVDTPIG
FDETKSLLDTIADENSLNPAELLTNENLRQHIESLLDKLTENQQQVIARRFGLRGFEKATLEDVGKEIDLTRERVRQIQV
EALKTLRTLLERVGLTQEDLF

Nucleotide

• Length: 1026 bp

>NTDB_id=164666 BE842_RS02140 WP_011213596.1 461471..462496(+) (rpoS) [Legionella pneumophila subsp. pneumophila strain FFI103]
ATGCAAGATGAAGAAGAGCCAATTAAGGACAAGGAATTTAAAGAAGAGGAATGGTCTGAGCCAGATGATGACTCTCTGTT
GTCAGAAGAGGATATTGAACCTGATATCGAAAAAATGGAAGAAGAGCTTGATGAACTTCCAGAGTTTACTGATGATGAAG
CTTTTCCTTCATTCCAGCGCGGGAAAAATATTGCCAAGGCTTTAGATGCAACTCAACTTTACTTGGGTGAAATTGGTTTT
TCTCCTTTGCTAACGGCTGAAGAAGAAATCCATTATGCGACTCTTGCTTTAAAAGGTGATATGGAAGCACGCAAGAAAAT
GATTGAGTCGAATTTGCGCCTGGTGGTTAAAATAGCCAGACGTTATCTTAATAGAGGCTTACCTCTTCTGGATCTAATCG
AAGAGGGTAACCTGGGTTTAATGAAGTCTGTTGAGAAATTTGACCCCAAGCGAGGATTCCGTTTTTCAACTTATGCGACC
TGGTGGATTAGGCAAACTATTGAGCGCGCAATTATGAATCAAACGAGAACTATCCGCCTGCCTATTCATGTCGTGAAAGA
ACTTAATGTATATCTCAGAGCGGCAAGACAATTGACGCAAAAACTGGATCATGAACCATCACCGGAAGAAATAGCGGAAA
TGGTGGATAAGCCTTTGGAGGATGTCCAAAAATTATTGGGTTTGAATGATAAAGTCGCCTCGGTTGATACTCCAATTGGA
TTTGATGAAACCAAATCTTTATTAGATACAATTGCTGATGAAAACAGTTTAAATCCTGCAGAGCTGCTAACCAACGAGAA
TTTAAGGCAGCATATAGAATCTCTTCTGGATAAATTAACTGAGAATCAACAGCAGGTTATCGCAAGACGTTTTGGGTTAA
GAGGTTTTGAAAAAGCGACACTGGAAGACGTTGGTAAAGAAATTGATTTGACCCGAGAACGCGTTCGCCAAATTCAAGTT
GAAGCTTTGAAGACACTTAGAACTTTGTTAGAGCGGGTTGGACTAACACAAGAGGATTTGTTTTGA

Domains

Predicted by InterProScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (69-101)

• Sigma-70 region 3 (Sigma70_r3) (187-261)

• Sigma-70 region 2 (Sigma70_r2) (107-176)

• Sigma-70, region 4 (Sigma70_r4) (275-327)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	67.509	81.232	0.548