Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   AVM03_RS18910 Genome accession   NZ_CP013727
Coordinates   3903372..3903950 (+) Length   192 a.a.
NCBI ID   WP_003155179.1    Uniprot ID   G1BIW7
Organism   Bacillus amyloliquefaciens strain MBE1283     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3898372..3908950
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVM03_RS20815 - 3898872..3899387 (-) 516 WP_369719112.1 methyl-accepting chemotaxis protein -
  AVM03_RS20820 - 3899631..3900371 (-) 741 Protein_3772 protoglobin domain-containing protein -
  AVM03_RS18895 (AVM03_18895) - 3900287..3901810 (-) 1524 WP_003155183.1 FAD-dependent oxidoreductase -
  AVM03_RS18900 (AVM03_18900) - 3901935..3902792 (+) 858 WP_003155182.1 SDR family oxidoreductase -
  AVM03_RS18905 (AVM03_18905) - 3902823..3903056 (-) 234 WP_003155181.1 IDEAL domain-containing protein -
  AVM03_RS18910 (AVM03_18910) comK 3903372..3903950 (+) 579 WP_003155179.1 competence protein ComK Regulator
  AVM03_RS18915 (AVM03_18915) - 3904095..3904463 (+) 369 WP_003155175.1 iron chaperone -
  AVM03_RS18920 (AVM03_18920) - 3904490..3904861 (+) 372 WP_003155172.1 iron chaperone -
  AVM03_RS18925 (AVM03_18925) - 3904996..3905706 (-) 711 WP_003155170.1 YrpD family protein -
  AVM03_RS18930 (AVM03_18930) - 3905902..3906171 (+) 270 WP_003155168.1 excalibur calcium-binding domain-containing protein -
  AVM03_RS18935 (AVM03_18935) - 3906204..3906521 (-) 318 WP_058906686.1 YbjQ family protein -
  AVM03_RS18940 (AVM03_18940) - 3906562..3908031 (-) 1470 WP_015388467.1 sodium:solute symporter family protein -
  AVM03_RS18945 (AVM03_18945) - 3908028..3908228 (-) 201 WP_003155162.1 DUF3311 domain-containing protein -
  AVM03_RS18950 (AVM03_18950) - 3908349..3908708 (-) 360 WP_003155160.1 hypothetical protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22315.58 Da        Isoelectric Point: 8.1419

>NTDB_id=164518 AVM03_RS18910 WP_003155179.1 3903372..3903950(+) (comK) [Bacillus amyloliquefaciens strain MBE1283]
MCQKTHAPLESYEVNRSTIAVLPEEIDGKMGSKVIEKDCILYVSMKPIHIIDRSCRYFGSSYAGRKAGTYEAIKISHKPP
IMVDPSNHIFLFPTLSSARPQCGWISHVHVKDFQPTAFDDTAVTFSNGKTMELEVSYHSFENQVYRTAYLRTTFQDRMGS
HIPKRQEFMLYPKEERTRMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=164518 AVM03_RS18910 WP_003155179.1 3903372..3903950(+) (comK) [Bacillus amyloliquefaciens strain MBE1283]
ATGTGCCAGAAAACACACGCACCCTTAGAAAGCTATGAAGTAAATCGTTCAACCATCGCTGTTTTGCCTGAGGAAATAGA
CGGTAAAATGGGGTCGAAGGTCATTGAAAAAGACTGCATTCTGTATGTCAGCATGAAGCCGATTCACATCATCGACAGAA
GCTGCCGCTACTTTGGCTCCAGCTATGCCGGGAGAAAAGCGGGAACATATGAAGCGATTAAAATTTCTCACAAGCCGCCG
ATTATGGTGGACCCTTCAAATCACATCTTTTTATTCCCTACACTTTCTTCTGCAAGGCCTCAATGCGGCTGGATATCTCA
TGTGCACGTTAAAGATTTTCAACCGACGGCATTTGATGACACAGCGGTCACGTTCTCAAACGGCAAAACGATGGAACTGG
AAGTATCCTATCATTCTTTTGAAAATCAGGTTTACAGAACCGCCTATCTCAGAACCACTTTTCAGGACAGGATGGGCAGT
CATATCCCGAAGCGGCAGGAATTCATGCTGTATCCGAAAGAAGAGCGGACAAGAATGATCTACGACTTTATTTTGCGGGA
GCTGGGGGAGAGATATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G1BIW7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

82.292

100

0.823

Multiple sequence alignment