Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   AVM03_RS17880 Genome accession   NZ_CP013727
Coordinates   3715242..3716033 (+) Length   263 a.a.
NCBI ID   WP_003155502.1    Uniprot ID   A0A9Q3QM78
Organism   Bacillus amyloliquefaciens strain MBE1283     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 3710242..3721033
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVM03_RS17860 (AVM03_17855) - 3712237..3713121 (+) 885 WP_025854027.1 PhzF family phenazine biosynthesis isomerase -
  AVM03_RS17865 (AVM03_17860) - 3713198..3713782 (+) 585 WP_003155509.1 nitroreductase family protein -
  AVM03_RS17870 (AVM03_17865) - 3713821..3714012 (-) 192 WP_003155508.1 YfhD family protein -
  AVM03_RS19855 - 3714083..3714193 (-) 111 WP_003155504.1 YfhE family protein -
  AVM03_RS17875 (AVM03_17870) - 3714251..3715150 (-) 900 WP_025854028.1 TIGR01777 family oxidoreductase -
  AVM03_RS17880 (AVM03_17875) recX 3715242..3716033 (+) 792 WP_003155502.1 recombination regulator RecX Regulator
  AVM03_RS17885 (AVM03_17880) - 3716040..3716351 (+) 312 WP_003155501.1 YfhH family protein -
  AVM03_RS17890 (AVM03_17885) - 3716498..3717691 (+) 1194 WP_025650229.1 MFS transporter -
  AVM03_RS17895 (AVM03_17890) - 3717731..3718120 (-) 390 WP_058906651.1 DUF2606 family protein -
  AVM03_RS17900 (AVM03_17895) - 3718083..3718994 (-) 912 WP_003155497.1 trypsin-like serine peptidase -
  AVM03_RS17905 (AVM03_17900) - 3719139..3719291 (-) 153 WP_003155495.1 small, acid-soluble spore protein K -
  AVM03_RS17910 (AVM03_17905) - 3719415..3719684 (+) 270 WP_003155492.1 YfhJ family protein -
  AVM03_RS17915 (AVM03_17910) - 3719816..3720343 (+) 528 WP_046559435.1 SH3 domain-containing protein -
  AVM03_RS17920 (AVM03_17915) - 3720429..3720764 (+) 336 WP_015388524.1 SdpI family protein -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30978.18 Da        Isoelectric Point: 6.2735

>NTDB_id=164513 AVM03_RS17880 WP_003155502.1 3715242..3716033(+) (recX) [Bacillus amyloliquefaciens strain MBE1283]
MPFITKISTQKKNTERFNIFLDEKYAFSVDADVLVRFDLKKGKELDELDILEIQHGDDVKKAFNRAVEFLSYRMRSEKEV
RDHLKKKETPDMVISEVIHKLYDYRYLNDKEFAEAYASTHKKTNGKGPDVLFRELKAKGIDDDTIKETLSAFTFDEQIQE
ALKHIGKILKKDKKLSTKEIRQRAQMQLQRKGFPFDVINAALEQTEYENDDEAEMEALKAHAEKAIRKYRYDGSYESGMK
VKQYLFRKGFSIDDIDQFLQEEE

Nucleotide


Download         Length: 792 bp        

>NTDB_id=164513 AVM03_RS17880 WP_003155502.1 3715242..3716033(+) (recX) [Bacillus amyloliquefaciens strain MBE1283]
ATGCCGTTTATTACAAAAATATCGACCCAAAAGAAAAATACCGAGCGCTTCAACATCTTTCTTGATGAGAAATATGCATT
CAGCGTCGACGCCGACGTGCTTGTGCGTTTTGACCTGAAAAAAGGGAAAGAACTGGACGAGCTTGACATTCTTGAAATCC
AGCACGGTGATGACGTGAAAAAAGCCTTTAACCGCGCCGTAGAATTTTTATCATATCGGATGCGGTCTGAAAAAGAAGTC
CGGGATCACCTGAAGAAAAAAGAAACACCGGACATGGTCATTTCTGAAGTCATCCATAAACTGTACGATTACCGCTACTT
AAATGACAAAGAATTTGCCGAAGCCTATGCGAGCACCCACAAAAAAACAAACGGCAAAGGCCCTGACGTCCTGTTCCGCG
AGCTGAAAGCGAAAGGAATAGACGACGATACCATCAAGGAGACGCTCAGCGCGTTTACATTTGATGAGCAGATACAAGAA
GCGCTGAAACATATCGGCAAAATCCTCAAAAAAGATAAAAAGCTGTCCACAAAAGAGATCAGACAGCGGGCGCAGATGCA
GCTTCAGCGAAAAGGTTTCCCTTTCGACGTCATCAATGCCGCTCTGGAGCAGACGGAGTATGAAAATGATGATGAAGCCG
AGATGGAAGCTCTGAAGGCTCATGCGGAAAAAGCGATCAGGAAATACCGCTATGACGGCAGCTATGAAAGCGGAATGAAG
GTCAAACAGTACTTATTCAGAAAAGGATTCTCGATTGACGATATTGATCAATTCTTGCAGGAAGAGGAGTAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

79.087

100

0.791

Multiple sequence alignment