Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   AVM03_RS15705 Genome accession   NZ_CP013727
Coordinates   3273418..3274371 (+) Length   317 a.a.
NCBI ID   WP_003156332.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain MBE1283     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3268418..3279371
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVM03_RS15685 (AVM03_15675) - 3268462..3269895 (+) 1434 WP_161625271.1 sensor histidine kinase -
  AVM03_RS15690 (AVM03_15680) rapC 3270048..3271196 (+) 1149 WP_003156336.1 Rap family tetratricopeptide repeat protein Regulator
  AVM03_RS15695 (AVM03_15685) phrC 3271180..3271299 (+) 120 WP_003156334.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  AVM03_RS19780 - 3271449..3271559 (-) 111 WP_369719092.1 YjcZ family sporulation protein -
  AVM03_RS15700 (AVM03_15690) - 3271639..3273003 (-) 1365 WP_014304341.1 aspartate kinase -
  AVM03_RS15705 (AVM03_15695) ceuB 3273418..3274371 (+) 954 WP_003156332.1 ABC transporter permease Machinery gene
  AVM03_RS15710 (AVM03_15700) - 3274361..3275308 (+) 948 WP_003156331.1 iron chelate uptake ABC transporter family permease subunit -
  AVM03_RS15715 (AVM03_15705) - 3275302..3276060 (+) 759 WP_003156330.1 ABC transporter ATP-binding protein -
  AVM03_RS15720 (AVM03_15710) - 3276082..3277026 (+) 945 WP_003156329.1 siderophore ABC transporter substrate-binding protein -
  AVM03_RS15725 (AVM03_15715) - 3277068..3278492 (-) 1425 WP_015388705.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34959.26 Da        Isoelectric Point: 9.6741

>NTDB_id=164511 AVM03_RS15705 WP_003156332.1 3273418..3274371(+) (ceuB) [Bacillus amyloliquefaciens strain MBE1283]
MKLRYLLLLLAVLACTSIFIGVEDLSPLDIFHLNKEQAGTLFDSRLPRLVSIIIAGMSLSICGLIMQQISRNKFVSPTTA
GTMDWARLGILISLMLFTSASPLVKMSIAFIFALAGNFLFMKILERIKFNDAIFIPLVGLMLGNIVSSIATFIAYKYDLI
QNLSSWLQGDFSLVVKGRYELLYLSIPLVIIAYVYADKFTVAGMGESFSVNLGLKYKRVVNIGLIIVSLIASLVILTVGM
LPFLGLIIPNMVSIYKGDNLRSSLPHTALLGAVFVLFCDILGRVIIFPYEISIGLMVGVIGSGIFLYMLLRRKAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=164511 AVM03_RS15705 WP_003156332.1 3273418..3274371(+) (ceuB) [Bacillus amyloliquefaciens strain MBE1283]
ATGAAGCTACGTTACTTACTTTTGCTACTGGCGGTTTTGGCGTGTACTTCTATATTTATCGGTGTAGAAGATTTGTCGCC
GCTGGATATTTTTCATTTAAATAAAGAACAGGCAGGTACATTGTTTGACAGCCGGCTGCCGCGTTTGGTGAGCATTATCA
TCGCCGGCATGAGCCTGAGCATCTGCGGATTAATCATGCAGCAGATCAGCCGGAATAAATTTGTATCGCCGACGACTGCG
GGAACGATGGACTGGGCAAGGCTCGGAATTTTGATTTCATTAATGCTTTTTACGTCAGCGAGCCCGCTTGTGAAAATGTC
TATCGCTTTTATTTTCGCGTTGGCGGGAAATTTCCTTTTCATGAAAATCCTCGAGAGAATCAAGTTCAATGATGCAATTT
TTATTCCTCTCGTCGGTTTAATGCTTGGGAACATCGTCAGCTCAATCGCCACGTTTATCGCATATAAATACGACCTGATC
CAAAACCTGTCATCTTGGCTGCAGGGAGATTTCTCACTGGTCGTTAAAGGCCGGTATGAGCTTTTATATCTGAGTATCCC
GCTGGTGATCATCGCTTATGTGTATGCGGATAAATTTACGGTGGCGGGAATGGGAGAGAGCTTTTCCGTCAATCTCGGCC
TGAAATACAAACGCGTCGTCAATATCGGTCTGATTATCGTGTCGCTCATCGCTTCACTGGTGATCCTGACCGTCGGGATG
CTGCCGTTTCTCGGTTTGATCATTCCCAATATGGTGTCGATTTACAAAGGGGACAACCTGAGGAGCAGCCTGCCTCACAC
AGCTCTCTTGGGCGCTGTTTTTGTGCTGTTTTGCGACATTTTGGGAAGGGTGATCATCTTCCCGTACGAAATTTCCATCG
GCCTGATGGTCGGTGTTATCGGCAGCGGCATCTTCCTGTATATGCTGTTAAGGAGAAAAGCATATGAGTCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.481

99.685

0.533

Multiple sequence alignment