Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   AVM03_RS15510 Genome accession   NZ_CP013727
Coordinates   3212195..3212632 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain MBE1283     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3207195..3217632
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVM03_RS20490 - 3207773..3207937 (-) 165 Protein_3100 molybdopterin dinucleotide binding domain-containing protein -
  AVM03_RS15480 (AVM03_15470) - 3208051..3209253 (+) 1203 WP_057080005.1 GTP-binding protein -
  AVM03_RS15485 (AVM03_15475) - 3209319..3210455 (+) 1137 WP_003156594.1 zinc-dependent alcohol dehydrogenase -
  AVM03_RS15490 (AVM03_15480) - 3210470..3210904 (+) 435 WP_058906550.1 RDD family protein -
  AVM03_RS15495 (AVM03_15485) - 3211021..3211296 (+) 276 WP_371745793.1 YckD family protein -
  AVM03_RS20310 - 3211400..3211516 (+) 117 WP_015388718.1 family 1 glycosylhydrolase -
  AVM03_RS15500 (AVM03_15490) - 3211515..3211734 (+) 220 Protein_3106 family 1 glycosylhydrolase -
  AVM03_RS15505 (AVM03_15495) nin/comJ 3211775..3212173 (-) 399 WP_014304317.1 competence protein ComJ Regulator
  AVM03_RS15510 (AVM03_15500) nucA/comI 3212195..3212632 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  AVM03_RS15515 (AVM03_15505) hxlB 3212991..3213548 (-) 558 WP_014304318.1 6-phospho-3-hexuloisomerase -
  AVM03_RS15520 (AVM03_15510) hxlA 3213545..3214180 (-) 636 WP_014304319.1 3-hexulose-6-phosphate synthase -
  AVM03_RS15525 (AVM03_15515) - 3214412..3214774 (+) 363 WP_014304320.1 winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=164508 AVM03_RS15510 WP_003156588.1 3212195..3212632(-) (nucA/comI) [Bacillus amyloliquefaciens strain MBE1283]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=164508 AVM03_RS15510 WP_003156588.1 3212195..3212632(-) (nucA/comI) [Bacillus amyloliquefaciens strain MBE1283]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGGCATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641

Multiple sequence alignment