Detailed information
Bioinformatically predicted
Overview
| Name | abrB | Type | Regulator |
| Locus tag | AVM03_RS14010 | Genome accession | NZ_CP013727 |
| Coordinates | 2929742..2930032 (-) | Length | 96 a.a. |
| NCBI ID | WP_169510469.1 | Uniprot ID | - |
| Organism | Bacillus amyloliquefaciens strain MBE1283 | ||
| Function | repression of comK; repression of rok (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2924742..2935032
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AVM03_RS13970 (AVM03_13960) | darA | 2924759..2925088 (+) | 330 | WP_004264734.1 | cyclic di-AMP receptor DarA | - |
| AVM03_RS13975 (AVM03_13965) | - | 2925101..2925541 (+) | 441 | WP_004264730.1 | YaaR family protein | - |
| AVM03_RS13980 (AVM03_13970) | holB | 2925553..2926542 (+) | 990 | WP_058906507.1 | DNA polymerase III subunit delta' | - |
| AVM03_RS13985 (AVM03_13975) | ricT | 2926545..2927372 (+) | 828 | WP_004264723.1 | competence/sporulation regulator complex protein RicT | - |
| AVM03_RS13990 (AVM03_13980) | yabA | 2927387..2927746 (+) | 360 | WP_004264720.1 | replication initiation-control protein YabA | - |
| AVM03_RS13995 (AVM03_13985) | - | 2927807..2928550 (+) | 744 | WP_014304191.1 | tRNA1(Val) (adenine(37)-N6)-methyltransferase | - |
| AVM03_RS14000 (AVM03_13990) | - | 2928537..2928836 (+) | 300 | WP_004264714.1 | GIY-YIG nuclease family protein | - |
| AVM03_RS14005 (AVM03_13995) | rsmI | 2928811..2929692 (+) | 882 | WP_044052729.1 | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | - |
| AVM03_RS14010 (AVM03_14000) | abrB | 2929742..2930032 (-) | 291 | WP_169510469.1 | transition state genes transcriptional regulator AbrB | Regulator |
| AVM03_RS14015 (AVM03_14005) | metG | 2930515..2932506 (+) | 1992 | WP_015388789.1 | methionine--tRNA ligase | - |
| AVM03_RS14020 (AVM03_14010) | - | 2932582..2933349 (+) | 768 | WP_058906508.1 | TatD family hydrolase | - |
| AVM03_RS14025 (AVM03_14015) | - | 2933484..2934809 (+) | 1326 | WP_088005470.1 | G5 and 3D domain-containing protein | - |
Sequence
Protein
Download Length: 96 a.a. Molecular weight: 10753.57 Da Isoelectric Point: 6.3482
>NTDB_id=164503 AVM03_RS14010 WP_169510469.1 2929742..2930032(-) (abrB) [Bacillus amyloliquefaciens strain MBE1283]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK
Nucleotide
Download Length: 291 bp
>NTDB_id=164503 AVM03_RS14010 WP_169510469.1 2929742..2930032(-) (abrB) [Bacillus amyloliquefaciens strain MBE1283]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTCGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTCGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| abrB | Bacillus subtilis subsp. subtilis str. 168 |
97.917 |
100 |
0.979 |