Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   AVM03_RS13785 Genome accession   NZ_CP013727
Coordinates   2887220..2888332 (+) Length   370 a.a.
NCBI ID   WP_014304178.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain MBE1283     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2882220..2893332
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVM03_RS13765 (AVM03_13755) rnpA 2882932..2883282 (-) 351 WP_004392944.1 ribonuclease P protein component -
  AVM03_RS19730 rpmH 2883437..2883571 (-) 135 WP_003178075.1 50S ribosomal protein L34 -
  AVM03_RS13770 (AVM03_13760) dnaA 2884193..2885533 (+) 1341 WP_004392913.1 chromosomal replication initiator protein DnaA -
  AVM03_RS13775 (AVM03_13765) dnaN 2885718..2886854 (+) 1137 WP_004392911.1 DNA polymerase III subunit beta -
  AVM03_RS13780 (AVM03_13770) rlbA 2886989..2887204 (+) 216 WP_004392910.1 ribosome maturation protein RlbA -
  AVM03_RS13785 (AVM03_13775) recF 2887220..2888332 (+) 1113 WP_014304178.1 DNA replication/repair protein RecF Machinery gene
  AVM03_RS13790 (AVM03_13780) remB 2888350..2888595 (+) 246 WP_004392908.1 extracellular matrix regulator RemB -
  AVM03_RS13795 (AVM03_13785) gyrB 2888655..2890571 (+) 1917 WP_004392900.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  AVM03_RS13800 (AVM03_13790) gyrA 2890787..2893246 (+) 2460 WP_004392898.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42428.35 Da        Isoelectric Point: 7.0882

>NTDB_id=164501 AVM03_RS13785 WP_014304178.1 2887220..2888332(+) (recF) [Bacillus amyloliquefaciens strain MBE1283]
MYIQNLELTSYRNYERAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDEDYAKIEGRVMKRNGD
IPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSAVYLYDLSLYQKILSQR
NHFLKQLQSRKQTDRTMLDVLTDQLIEAAAKVVARRLQFTAQLEKWAQPIHSGISRGIEELTLKYHTALDVSDPKDLSKI
GNSYQESFSKLKEKEIERGVTLFGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHDTLHQAGMFRVENGALVK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=164501 AVM03_RS13785 WP_014304178.1 2887220..2888332(+) (recF) [Bacillus amyloliquefaciens strain MBE1283]
TTGTATATCCAAAATTTAGAATTAACATCCTACCGTAATTATGAGCGCGCTGAGCTTCAATTCGAAAACAAGGTGAATGT
GATCATCGGGGAAAATGCCCAGGGCAAAACCAATCTGATGGAAGCCATCTATGTCCTTTCGATGGCAAAATCACACCGCA
CCTCAAATGACAAAGAACTTATACGGTGGGACGAAGACTATGCTAAAATAGAAGGAAGAGTGATGAAGCGCAACGGGGAC
ATCCCGATGCAGCTTGTCATCTCCAAAAAAGGTAAAAAGGGCAAGGTCAATCATATAGAGCAGCAAAAACTCAGTCAGTA
TGTCGGAGCGCTGAACACCATTATGTTTGCCCCTGAGGATTTAAATCTCGTCAAAGGAAGCCCTCAGGTGAGGAGAAGAT
TTCTCGATATGGAGATCGGGCAGGTTTCTGCCGTTTATCTGTATGATTTATCTCTTTATCAAAAAATCCTTTCACAGCGG
AATCATTTTCTGAAACAGCTGCAAAGCCGGAAACAGACTGACCGGACCATGCTTGACGTTCTCACTGATCAGCTGATTGA
AGCAGCCGCAAAAGTTGTCGCCAGACGTCTGCAGTTTACGGCGCAGCTTGAAAAATGGGCGCAGCCGATCCATTCCGGCA
TTTCCCGGGGAATTGAAGAACTGACGCTTAAGTATCACACAGCGCTTGATGTATCAGATCCCAAAGATTTGTCGAAAATA
GGTAACAGCTACCAGGAGTCTTTTTCGAAATTAAAAGAAAAAGAAATAGAACGAGGCGTCACATTATTCGGACCGCATCG
GGATGATGTCCTTTTTTATGTGAACGGACGCGATGTGCAGACTTACGGTTCGCAGGGACAGCAGCGTACGACGGCTTTGT
CTCTGAAGCTGGCTGAAATAGATTTGATTCATGAAGAAATCGGAGAATACCCCATTTTACTTTTGGATGATGTACTAAGC
GAGCTGGATGATTACCGACAGTCCCATTTGCTTCATACGATCCAAGGCCGTGTGCAGACATTTGTCACCACGACGAGCGT
GGATGGCATTGACCACGATACCTTACATCAAGCAGGAATGTTCCGTGTGGAAAACGGTGCGTTAGTGAAGTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-346)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

94.054

100

0.941

Multiple sequence alignment