Detailed information NTG0164497

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: AVM03_RS12030
• Genome accession: NZ_CP013727
• Coordinates: 2527239..2528384 (+)
• Length: 381 a.a.
• NCBI ID: WP_017418708.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain MBE1283
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 2522239..2533384

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AVM03_RS12010 (AVM03_12000)	-	2522713..2523429 (-)	717	WP_014306017.1	Crp/Fnr family transcriptional regulator	-
AVM03_RS12015 (AVM03_12005)	narK	2523527..2524717 (-)	1191	WP_003151073.1	nitrate transporter NarK	-
AVM03_RS12020 (AVM03_12010)	argS	2524852..2526522 (-)	1671	WP_003151071.1	arginine--tRNA ligase	-
AVM03_RS12025 (AVM03_12015)	-	2526519..2526947 (-)	429	WP_003151069.1	DUF1934 domain-containing protein	-
AVM03_RS12030 (AVM03_12020)	rapF	2527239..2528384 (+)	1146	WP_017418708.1	tetratricopeptide repeat protein	Regulator
AVM03_RS20120	-	2528368..2528487 (+)	120	WP_017418707.1	PhrC/PhrF family phosphatase-inhibitory pheromone	-
AVM03_RS12035 (AVM03_12025)	speB	2528610..2529482 (-)	873	WP_058906421.1	agmatinase	-
AVM03_RS12040 (AVM03_12030)	speE	2529542..2530372 (-)	831	WP_003151052.1	spermidine synthase	-
AVM03_RS12045 (AVM03_12035)	-	2530572..2532644 (+)	2073	WP_058906422.1	transglycosylase domain-containing protein	-
AVM03_RS12050 (AVM03_12040)	-	2532668..2533099 (-)	432	WP_043867516.1	hypothetical protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45782.29 Da
• Isoelectric Point: 5.0722

>NTDB_id=164497 AVM03_RS12030 WP_017418708.1 2527239..2528384(+) (rapF) [Bacillus amyloliquefaciens strain MBE1283]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEEDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAESKLTYVKDHIEKAEFYFKMSEVYYYMKQTYVS
MDYARQAYLIYKDEKKYNIRLTQCHSLFGANYLDVKQYDHAISHFQKAYTMAELEQQPQLMGRTLFNIALCHNNQNNKVE
AIPHLKEAIAVFEKAQMSHSLPQPYFLLTQIYFKLENIDNAYDYHKKGISICKEIDDIIYEEKFKFLEYLYMPDPRDTLI
NDCLHFLESKLMYADIEELALDVAKYYYTKEEYKKASVYFLKVEEARQQIEGGVNLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=164497 AVM03_RS12030 WP_017418708.1 2527239..2528384(+) (rapF) [Bacillus amyloliquefaciens strain MBE1283]
GTGGCGAGTGTTTTATCGTCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAGCTTGCAGGCCTGGAAGAAGATCAGGATCTTCATCTGTACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGGCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAAAGCAAACTGACGTACG
TTAAAGATCATATAGAAAAAGCTGAATTTTACTTTAAAATGTCAGAAGTCTATTATTATATGAAACAAACTTATGTATCG
ATGGATTATGCGCGGCAGGCTTATTTAATTTATAAAGATGAAAAAAAATACAATATTAGATTAACCCAGTGCCATTCTTT
ATTTGGGGCTAATTATCTTGATGTAAAGCAATACGATCACGCGATTTCCCACTTTCAAAAGGCATATACGATGGCTGAAT
TGGAGCAGCAGCCGCAATTAATGGGGAGAACACTTTTTAACATCGCTTTATGCCATAATAATCAAAACAATAAAGTCGAG
GCTATTCCCCATTTAAAAGAAGCCATAGCTGTTTTTGAAAAAGCTCAAATGAGCCATTCACTTCCGCAGCCCTACTTCTT
ACTTACACAGATTTATTTTAAGTTAGAAAATATAGATAATGCGTACGATTATCATAAAAAAGGCATCTCAATATGTAAGG
AAATAGATGATATAATTTACGAGGAAAAATTTAAATTTTTGGAATATTTATATATGCCGGATCCAAGAGATACATTAATA
AACGATTGTCTGCATTTTCTTGAAAGTAAATTGATGTATGCTGATATTGAGGAATTAGCCCTTGATGTAGCTAAATATTA
TTACACAAAAGAAGAATATAAAAAAGCTTCTGTCTACTTTTTAAAAGTTGAAGAAGCCAGACAGCAGATCGAAGGAGGAG
TGAATTTATATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	70.341	100	0.703
rapC	Bacillus subtilis subsp. subtilis str. 168	53.421	99.738	0.533