Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   AVM03_RS07390 Genome accession   NZ_CP013727
Coordinates   1618156..1618908 (-) Length   250 a.a.
NCBI ID   WP_003152643.1    Uniprot ID   A0A6A8LH02
Organism   Bacillus amyloliquefaciens strain MBE1283     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1613156..1623908
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVM03_RS07360 (AVM03_07355) - 1613508..1613942 (+) 435 WP_058906252.1 helix-turn-helix domain-containing protein -
  AVM03_RS07365 (AVM03_07360) - 1613956..1614402 (+) 447 WP_058906253.1 ImmA/IrrE family metallo-endopeptidase -
  AVM03_RS07370 (AVM03_07365) - 1614442..1615866 (+) 1425 WP_058906254.1 recombinase family protein -
  AVM03_RS07375 (AVM03_07370) radC 1615879..1616286 (-) 408 Protein_1524 RadC family protein -
  AVM03_RS07380 (AVM03_07375) - 1616318..1616887 (-) 570 WP_032856929.1 Maf family protein -
  AVM03_RS07385 (AVM03_07380) - 1617028..1618029 (-) 1002 WP_058906255.1 SPOR domain-containing protein -
  AVM03_RS07390 (AVM03_07385) comC 1618156..1618908 (-) 753 WP_003152643.1 prepilin peptidase Machinery gene
  AVM03_RS07395 (AVM03_07390) - 1619048..1620340 (-) 1293 WP_058906256.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  AVM03_RS07400 (AVM03_07395) - 1620399..1623041 (-) 2643 WP_003152640.1 valine--tRNA ligase -
  AVM03_RS07405 (AVM03_07400) - 1623494..1623685 (+) 192 WP_003152639.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27152.80 Da        Isoelectric Point: 9.2521

>NTDB_id=164479 AVM03_RS07390 WP_003152643.1 1618156..1618908(-) (comC) [Bacillus amyloliquefaciens strain MBE1283]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRSSCSFCRLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTMTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDSWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGAVYGMCAAARGSLGKKQPFPFAPAISAGSALSYLYGDELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=164479 AVM03_RS07390 WP_003152643.1 1618156..1618908(-) (comC) [Bacillus amyloliquefaciens strain MBE1283]
GTGCTTTTGATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTGCGAAT
CTCGGTTATTTCGCCGCGTTCATCCTGTTCGTTTTGCCGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCCGTCGTCTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCGAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCG
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTCCTCAT
GATTGTTACTATGACGGATCTGCAATATATGCTGATTCCTGACAAAGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGTATGTTTTCTCCGCTGGATTCATGGTATGCGGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAGCGGTATACGGTATGTGCGCCGCAGCCCGGGGCAGTCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGTGATGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGGGCTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6A8LH02

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

59.274

99.2

0.588

Multiple sequence alignment