Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   AVM03_RS04870 Genome accession   NZ_CP013727
Coordinates   1099611..1100219 (+) Length   202 a.a.
NCBI ID   WP_003153521.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain MBE1283     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1094611..1105219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVM03_RS04830 (AVM03_04825) - 1095664..1096170 (-) 507 WP_058906138.1 PTS sugar transporter subunit IIA -
  AVM03_RS04835 (AVM03_04830) - 1096309..1096722 (+) 414 WP_003153535.1 hypothetical protein -
  AVM03_RS04840 (AVM03_04835) - 1096752..1097186 (-) 435 WP_003153534.1 YppG family protein -
  AVM03_RS04845 (AVM03_04840) - 1097373..1097555 (+) 183 WP_003153532.1 YppF family protein -
  AVM03_RS04850 (AVM03_04845) - 1097594..1097962 (-) 369 WP_003153529.1 YppE family protein -
  AVM03_RS04855 (AVM03_04850) - 1098008..1098253 (-) 246 WP_003153527.1 DUF5446 family protein -
  AVM03_RS04860 (AVM03_04855) sspM 1098459..1098563 (+) 105 WP_003153525.1 acid-soluble spore protein SspM -
  AVM03_RS04865 (AVM03_04860) - 1098607..1099569 (-) 963 WP_041482374.1 DUF2515 domain-containing protein -
  AVM03_RS04870 (AVM03_04865) recU 1099611..1100219 (+) 609 WP_003153521.1 Holliday junction resolvase RecU Machinery gene
  AVM03_RS04875 (AVM03_04870) - 1100258..1103041 (+) 2784 WP_058906139.1 PBP1A family penicillin-binding protein -
  AVM03_RS04880 (AVM03_04875) - 1103119..1103610 (-) 492 WP_058906140.1 YpoC family protein -
  AVM03_RS04885 (AVM03_04880) nth 1103607..1104266 (-) 660 WP_003153517.1 endonuclease III -
  AVM03_RS04890 (AVM03_04885) dnaD 1104285..1104983 (-) 699 WP_003153516.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23680.82 Da        Isoelectric Point: 9.6872

>NTDB_id=164461 AVM03_RS04870 WP_003153521.1 1099611..1100219(+) (recU) [Bacillus amyloliquefaciens strain MBE1283]
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWERKE
KNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=164461 AVM03_RS04870 WP_003153521.1 1099611..1100219(+) (recU) [Bacillus amyloliquefaciens strain MBE1283]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCTCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCAACAACTGACTACAACGGCATTTATAAAGGACGCTACATTGATTTCGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCATGATCATCAGATTGAGCATATGAAGCAGGTGGTCAGGCAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGAGAGAAAGGAG
AAGAACGGCAGAAAATCAATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

90.955

98.515

0.896

Multiple sequence alignment