Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   AVM03_RS03105 Genome accession   NZ_CP013727
Coordinates   711707..712141 (+) Length   144 a.a.
NCBI ID   WP_003154085.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain MBE1283     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 706707..717141
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVM03_RS03100 (AVM03_03095) - 710207..711418 (-) 1212 WP_058906704.1 cytochrome P450 family protein -
  AVM03_RS03105 (AVM03_03100) nucA/comI 711707..712141 (+) 435 WP_003154085.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  AVM03_RS03110 (AVM03_03105) - 712201..712968 (+) 768 WP_025851167.1 YoaK family protein -
  AVM03_RS03115 (AVM03_03110) - 712989..713351 (-) 363 WP_003154082.1 hypothetical protein -
  AVM03_RS03120 (AVM03_03115) - 713544..714872 (-) 1329 WP_032857388.1 S8 family peptidase -
  AVM03_RS03125 (AVM03_03120) - 715051..715284 (+) 234 WP_058906034.1 hypothetical protein -
  AVM03_RS03130 (AVM03_03125) - 715540..716247 (+) 708 WP_003154076.1 poly-gamma-glutamate hydrolase family protein -
  AVM03_RS03135 (AVM03_03130) - 716308..716760 (+) 453 WP_014305039.1 OsmC family protein -
  AVM03_RS03140 (AVM03_03135) - 716774..717127 (-) 354 WP_003154073.1 DMT family transporter -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 15509.42 Da        Isoelectric Point: 6.8606

>NTDB_id=164460 AVM03_RS03105 WP_003154085.1 711707..712141(+) (nucA/comI) [Bacillus amyloliquefaciens strain MBE1283]
MNAFMKWAASLLLVISLQFGLTGAGIHSDSAAHAASRYDQVLYFPLSKYPETGNHIKDAISAGHSEICTIDRGGAENRRK
ESLKGIPTKPGFDRDEWPMAVCTEGGAGADIRYVTPSDNRGAGSWVGNQMSGYSDGTRVLFIVQ

Nucleotide


Download         Length: 435 bp        

>NTDB_id=164460 AVM03_RS03105 WP_003154085.1 711707..712141(+) (nucA/comI) [Bacillus amyloliquefaciens strain MBE1283]
ATGAATGCGTTTATGAAATGGGCGGCAAGTCTGCTTTTGGTGATCTCTCTTCAGTTCGGCCTTACGGGCGCCGGCATCCA
TTCGGACAGTGCTGCTCATGCTGCATCCCGATACGATCAGGTGCTGTATTTCCCGCTGTCAAAATATCCGGAGACGGGAA
ATCATATAAAAGACGCCATTTCGGCAGGTCATTCTGAGATTTGTACAATTGATCGGGGCGGAGCGGAGAACAGAAGGAAA
GAATCATTGAAAGGAATTCCGACAAAGCCCGGGTTTGACCGTGATGAATGGCCCATGGCAGTCTGCACAGAAGGCGGGGC
GGGGGCTGATATCAGATATGTAACCCCATCGGATAACCGCGGGGCCGGTTCATGGGTTGGAAATCAAATGAGCGGCTATT
CCGACGGCACGAGAGTATTATTTATCGTTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-138)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

56.452

86.111

0.486

Multiple sequence alignment