Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   AVM03_RS01585 Genome accession   NZ_CP013727
Coordinates   298662..299258 (+) Length   198 a.a.
NCBI ID   WP_003154591.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain MBE1283     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 293662..304258
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVM03_RS01555 (AVM03_01550) - 293876..294331 (+) 456 WP_003154599.1 flavodoxin -
  AVM03_RS01560 (AVM03_01555) dapD 294413..295123 (+) 711 WP_003154598.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  AVM03_RS01565 (AVM03_01560) - 295194..296318 (+) 1125 WP_014304923.1 N-acetyldiaminopimelate deacetylase -
  AVM03_RS01570 (AVM03_01565) - 296379..296624 (+) 246 WP_003154596.1 YkuS family protein -
  AVM03_RS01575 (AVM03_01570) - 296658..297464 (-) 807 WP_003154595.1 mechanosensitive ion channel family protein -
  AVM03_RS01580 (AVM03_01575) - 297752..298210 (+) 459 WP_024085241.1 TlpA disulfide reductase family protein -
  AVM03_RS01585 (AVM03_01580) rok 298662..299258 (+) 597 WP_003154591.1 transcriptional regulator Rok Regulator
  AVM03_RS01590 (AVM03_01585) - 299279..300271 (-) 993 WP_003154589.1 hypothetical protein -
  AVM03_RS01595 (AVM03_01590) - 300417..301019 (+) 603 WP_024085242.1 molybdenum cofactor guanylyltransferase -
  AVM03_RS01600 (AVM03_01595) - 301071..302090 (+) 1020 WP_058905987.1 molybdopterin-synthase adenylyltransferase MoeB -
  AVM03_RS01605 (AVM03_01600) glp 302108..303400 (+) 1293 WP_058905988.1 gephyrin-like molybdotransferase Glp -
  AVM03_RS01610 (AVM03_01605) mobB 303361..303882 (+) 522 WP_046559554.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22525.57 Da        Isoelectric Point: 9.6909

>NTDB_id=164454 AVM03_RS01585 WP_003154591.1 298662..299258(+) (rok) [Bacillus amyloliquefaciens strain MBE1283]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
TQPQSSQPQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETANDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=164454 AVM03_RS01585 WP_003154591.1 298662..299258(+) (rok) [Bacillus amyloliquefaciens strain MBE1283]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACGGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCGGTGCTTGCAGAGCTTGCAGCACAGGAAATGAGAAGCTATCAAAAGCCGCAG
ACACAGCCGCAATCCTCCCAGCCGCAGATGCAGTCTATTACGTCTCTTCCCGCCGGCATTCCAGACGGTTCTACAAGAAG
AAGAAGAGGGACGGCGAGACCAGGATCAAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACATTGAAACGCCACAATG
CAGCGATCAAAAGTTCCGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTTATG
CAAAGCTTAATTAAAATGTATCCGGAAGTGAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATCTCTCAGGA
AACAGCAGAAACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

86.082

97.98

0.843

Multiple sequence alignment