Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   AVM03_RS01485 Genome accession   NZ_CP013727
Coordinates   282799..283263 (-) Length   154 a.a.
NCBI ID   WP_003154622.1    Uniprot ID   A0A9Q3QIJ3
Organism   Bacillus amyloliquefaciens strain MBE1283     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 277799..288263
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVM03_RS01470 (AVM03_01465) - 278279..280099 (+) 1821 WP_058905985.1 PAS domain-containing protein -
  AVM03_RS01475 (AVM03_01470) - 280075..281294 (-) 1220 Protein_302 aminotransferase A -
  AVM03_RS20220 - 281495..281656 (-) 162 WP_007409608.1 hypothetical protein -
  AVM03_RS01480 (AVM03_01475) cheV 281845..282756 (+) 912 WP_014304917.1 chemotaxis protein CheV -
  AVM03_RS01485 (AVM03_01480) kre 282799..283263 (-) 465 WP_003154622.1 YkyB family protein Regulator
  AVM03_RS01490 (AVM03_01485) - 283386..284678 (-) 1293 WP_024085236.1 MFS transporter -
  AVM03_RS01495 (AVM03_01490) - 284754..285248 (-) 495 WP_088037173.1 L,D-transpeptidase family protein -
  AVM03_RS01500 (AVM03_01495) - 285323..286186 (-) 864 WP_025851492.1 metallophosphoesterase -
  AVM03_RS01505 (AVM03_01500) fadH 286330..287094 (+) 765 WP_003154618.1 2,4-dienoyl-CoA reductase -
  AVM03_RS19985 (AVM03_01505) - 287204..287752 (+) 549 Protein_310 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17784.55 Da        Isoelectric Point: 10.4864

>NTDB_id=164453 AVM03_RS01485 WP_003154622.1 282799..283263(-) (kre) [Bacillus amyloliquefaciens strain MBE1283]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=164453 AVM03_RS01485 WP_003154622.1 282799..283263(-) (kre) [Bacillus amyloliquefaciens strain MBE1283]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929

Multiple sequence alignment