Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   AVM03_RS00160 Genome accession   NZ_CP013727
Coordinates   27286..28239 (+) Length   317 a.a.
NCBI ID   WP_003155063.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain MBE1283     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 22286..33239
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVM03_RS00130 (AVM03_00130) argF 24104..25075 (+) 972 WP_058905931.1 ornithine carbamoyltransferase -
  AVM03_RS00135 (AVM03_00135) - 25151..25330 (+) 180 WP_003155070.1 YjzC family protein -
  AVM03_RS00140 (AVM03_00140) - 25367..25552 (-) 186 WP_003155069.1 YjzD family protein -
  AVM03_RS00150 (AVM03_00150) - 25813..26547 (+) 735 WP_046559485.1 hypothetical protein -
  AVM03_RS00155 (AVM03_00155) - 26630..27196 (+) 567 WP_003155065.1 hypothetical protein -
  AVM03_RS00160 (AVM03_00160) med 27286..28239 (+) 954 WP_003155063.1 BMP family ABC transporter substrate-binding protein Regulator
  AVM03_RS00165 (AVM03_00165) comZ 28252..28443 (+) 192 WP_003155061.1 ComZ family protein Regulator
  AVM03_RS00170 (AVM03_00170) - 28473..28691 (-) 219 WP_003155059.1 hypothetical protein -
  AVM03_RS00175 (AVM03_00175) - 28859..29797 (+) 939 WP_003155057.1 beta-ketoacyl-ACP synthase III -
  AVM03_RS00180 (AVM03_00180) fabF 29820..31058 (+) 1239 WP_003155056.1 beta-ketoacyl-ACP synthase II -
  AVM03_RS00185 (AVM03_00185) - 31142..31927 (+) 786 WP_012117278.1 DUF2268 domain-containing protein -
  AVM03_RS00190 (AVM03_00190) - 32101..33087 (+) 987 WP_003155054.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35345.94 Da        Isoelectric Point: 4.5594

>NTDB_id=164445 AVM03_RS00160 WP_003155063.1 27286..28239(+) (med) [Bacillus amyloliquefaciens strain MBE1283]
MITRLVMIFSVLLLLSGCTQTPFKGKIEKVGMLFPDTISDLVWGTKGYKGLLAIQSEFNVDVYYKENIRSDEDILKAIDD
FHKKGVNLLYGHGNEYEEIFNMISKDYPDMEFVVANGTAKSDNVTSVHLMGEAMGFFGGMTAAHMSKTNEVGVIASFLWQ
PEVDGFIKGAKYEKPDITVNTEFTDHWDNGNEALHLYEKLKAEGTDVVYPAGDGYNVPVIQQIKKDGLYAIGYVAEQSNL
GKNTVLTSTVQNVDKAYTLIAEQYNKGTLKSGDHDFDFREGVVEMGTFSPLVDKAFQDKISDLVKTYNQTNELPSNE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=164445 AVM03_RS00160 WP_003155063.1 27286..28239(+) (med) [Bacillus amyloliquefaciens strain MBE1283]
TTGATCACCAGGCTTGTCATGATCTTTTCTGTCCTCCTTTTATTGAGCGGATGCACACAAACTCCGTTTAAAGGAAAAAT
TGAGAAGGTCGGAATGCTTTTCCCCGATACCATCAGTGACTTGGTATGGGGCACAAAAGGTTACAAAGGTTTATTAGCGA
TACAATCTGAATTTAACGTTGACGTTTATTATAAAGAAAATATCAGATCCGATGAAGATATTTTAAAAGCGATAGATGAT
TTTCATAAAAAAGGAGTCAATCTTTTATACGGGCACGGAAATGAATACGAGGAAATCTTCAATATGATCAGCAAGGATTA
TCCCGACATGGAATTCGTCGTCGCAAACGGAACGGCGAAAAGCGATAATGTCACAAGCGTTCACCTTATGGGAGAAGCAA
TGGGTTTTTTCGGGGGAATGACGGCCGCCCATATGTCAAAAACCAATGAGGTCGGTGTCATCGCCTCTTTTCTGTGGCAG
CCTGAAGTAGACGGCTTTATCAAAGGGGCGAAATATGAAAAGCCTGATATCACCGTCAATACTGAATTTACGGACCACTG
GGATAACGGCAATGAAGCGCTGCATCTTTACGAGAAGTTAAAAGCGGAAGGCACGGATGTTGTATATCCGGCCGGAGACG
GGTATAATGTTCCTGTCATTCAGCAAATCAAAAAAGACGGGCTTTACGCCATCGGCTATGTCGCCGAGCAATCGAATCTC
GGCAAAAACACGGTGCTGACAAGCACGGTGCAAAACGTAGATAAAGCCTATACATTAATTGCCGAGCAATATAATAAAGG
TACGCTCAAGAGCGGAGATCACGACTTTGATTTCAGGGAAGGAGTCGTTGAAATGGGGACGTTCAGCCCGCTGGTGGACA
AAGCGTTTCAAGACAAAATCTCAGACCTTGTCAAAACGTATAATCAAACAAATGAACTGCCGTCAAATGAATAG

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(27-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

78.549

100

0.785

Multiple sequence alignment