Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   AUZ27_RS11090 Genome accession   NZ_CP013722
Coordinates   2202926..2204731 (+) Length   601 a.a.
NCBI ID   WP_058876490.1    Uniprot ID   -
Organism   Listeria monocytogenes strain Lm 3163     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 2197926..2209731
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AUZ27_RS11065 (AUZ27_11065) - 2197972..2199048 (+) 1077 WP_003722316.1 ABC transporter ATP-binding protein -
  AUZ27_RS11070 (AUZ27_11070) - 2199045..2200013 (+) 969 WP_003722315.1 ABC transporter ATP-binding protein -
  AUZ27_RS11075 (AUZ27_11075) spxA 2200332..2200727 (+) 396 WP_003720569.1 transcriptional regulator SpxA -
  AUZ27_RS11080 (AUZ27_11080) mecA 2200959..2201612 (+) 654 WP_003722314.1 adaptor protein MecA -
  AUZ27_RS11085 (AUZ27_11085) - 2201738..2202853 (+) 1116 WP_010989922.1 competence protein CoiA -
  AUZ27_RS11090 (AUZ27_11090) pepF 2202926..2204731 (+) 1806 WP_058876490.1 oligoendopeptidase F Regulator
  AUZ27_RS11095 (AUZ27_11095) - 2205030..2205290 (+) 261 WP_003722311.1 DUF3116 family protein -
  AUZ27_RS11100 (AUZ27_11100) isdC 2205501..2206127 (+) 627 WP_023548543.1 heme uptake protein IsdC -
  AUZ27_RS11105 (AUZ27_11105) hbp2 2206142..2207851 (+) 1710 WP_003722309.1 hemin/hemoglobin-binding protein Hbp2 -
  AUZ27_RS11110 (AUZ27_11110) isdE 2207938..2208810 (+) 873 WP_010989920.1 heme ABC transporter substrate-binding protein IsdE -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 68601.60 Da        Isoelectric Point: 4.5471

>NTDB_id=164335 AUZ27_RS11090 WP_058876490.1 2202926..2204731(+) (pepF) [Listeria monocytogenes strain Lm 3163]
MSKTNALPLREEVPENLTWDLTTIYPNDEAWEKAFTDLQKITEESDQFKGRLSESSQTLYEALQFRDKAYDLISNLYVYA
HLKMDQDTANAKYQGLHSRAGSLVTKLMSALSYYDPEILAMDENVLKQFLDENKDLQLYDHLLEELNLSRPYILSEKEEA
LLANAGEVLGSSSNTFNTLNNADMKFPTIKDENGEDIEITHGRFGKLLESNDPRVRRDAFHGVYSVYEGLQNTLASTLNG
QVKKSNFYASTRGYTSAREAALSGNHIPETVYDSLLKSVNANASLLHRYVKLRKELLGLEELHMYDLYTPLSDDVNLEFT
YEEAKELVLEALKPLGDEYQAILKEAFDSRWIDVMENKGKRSGAYSSGSYSTNPYILLNWQDNINNVYTLAHELGHSVHS
YYTRKNQPFVYGDYSIFLAEVASTTNENLLTDYLLKKYDDPKVRAYLLNHYLDGFKGTVFRQTQFAEFEHAIHQADQQGV
ALTADFLTETYFDINKKYYGEAMVYDAEIGYEWSRIPHFYMNYYVFQYATGFSAASALSAKILTEGQDAVTAYIDFLKAG
SSDYPIDVLKKAGVDMATPNPVDDALKVFEQRLDELEELVK

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=164335 AUZ27_RS11090 WP_058876490.1 2202926..2204731(+) (pepF) [Listeria monocytogenes strain Lm 3163]
TTGAGTAAAACAAATGCATTACCTTTAAGAGAAGAAGTACCAGAAAATCTAACTTGGGATTTGACTACGATTTATCCGAA
TGATGAAGCATGGGAAAAAGCATTTACGGATTTGCAAAAAATCACAGAGGAAAGCGACCAATTTAAAGGTCGTTTATCGG
AAAGTAGCCAAACACTTTATGAAGCACTTCAATTTCGAGATAAAGCATATGATTTGATTAGTAACTTATATGTATATGCT
CATTTGAAAATGGACCAAGATACAGCTAATGCGAAATATCAAGGTTTACATAGTCGTGCAGGAAGCCTAGTTACAAAGCT
AATGTCTGCACTCTCTTACTATGACCCAGAAATTTTAGCTATGGATGAAAATGTTCTAAAACAATTTTTAGATGAGAATA
AAGATTTACAATTATATGATCATTTGTTGGAAGAGTTAAATTTAAGTCGACCTTATATTTTGAGTGAGAAGGAAGAGGCT
TTACTAGCTAATGCAGGTGAAGTGCTTGGAAGTTCGTCCAATACTTTTAATACCTTGAATAATGCTGATATGAAGTTTCC
AACTATTAAAGATGAAAATGGGGAAGATATCGAAATTACTCATGGCCGTTTTGGGAAATTGTTAGAAAGTAATGATCCAC
GAGTGCGTCGTGATGCATTTCATGGTGTGTATTCAGTTTATGAAGGATTACAAAACACATTAGCATCTACTTTAAATGGA
CAAGTGAAAAAATCTAATTTTTATGCTTCTACGCGAGGGTATACATCGGCTCGTGAAGCGGCTCTCTCTGGTAATCATAT
TCCTGAAACAGTATATGACTCATTGTTGAAATCAGTGAATGCTAATGCAAGTTTGCTTCATCGTTATGTGAAGTTACGTA
AGGAATTACTTGGCTTAGAAGAATTGCATATGTATGACCTTTATACGCCACTTTCTGATGATGTTAATTTGGAGTTCACT
TATGAGGAAGCAAAAGAACTCGTGCTTGAGGCGCTGAAACCACTTGGTGATGAATATCAAGCGATTTTAAAAGAGGCATT
TGATAGTCGTTGGATTGATGTGATGGAAAATAAAGGGAAACGTAGTGGAGCCTATTCTTCTGGTTCATATAGTACGAATC
CTTATATTTTACTCAATTGGCAAGATAATATTAATAATGTTTACACGCTTGCACATGAATTAGGACATAGTGTGCATAGT
TATTATACAAGAAAAAATCAACCATTTGTTTATGGTGATTATTCGATTTTCTTAGCGGAGGTTGCTTCGACTACGAATGA
AAATTTACTAACTGATTATCTGCTTAAGAAATATGATGATCCAAAAGTTCGTGCATACTTGTTGAATCACTATTTGGATG
GATTCAAGGGTACTGTATTCCGTCAAACGCAATTTGCTGAATTTGAACATGCCATTCATCAAGCGGATCAACAAGGAGTG
GCTTTGACTGCGGATTTCTTGACGGAAACATATTTTGATATTAACAAGAAATATTACGGAGAAGCGATGGTTTATGATGC
TGAAATTGGTTATGAATGGTCTCGGATTCCGCATTTTTATATGAATTATTATGTGTTCCAATATGCGACTGGTTTTTCAG
CAGCATCTGCATTAAGTGCGAAAATTTTAACAGAAGGTCAAGATGCTGTAACAGCCTATATTGATTTCTTGAAAGCAGGA
AGTTCGGATTATCCTATCGATGTGTTGAAAAAAGCAGGTGTCGATATGGCGACCCCTAATCCCGTAGATGATGCATTAAA
GGTATTTGAACAAAGATTGGATGAATTGGAAGAGCTGGTTAAATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(117-186)

Peptidase family M3 (Peptidase_M3)

(207-586)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.52

98.502

0.507

Multiple sequence alignment