Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   AVJ22_RS08725 Genome accession   NZ_CP013714
Coordinates   1787587..1788303 (+) Length   238 a.a.
NCBI ID   WP_065338399.1    Uniprot ID   -
Organism   Staphylococcus equorum strain C2014     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1782587..1793303
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVJ22_RS08700 (AVJ22_08685) - 1783138..1783767 (+) 630 WP_065338394.1 nitroreductase family protein -
  AVJ22_RS08705 (AVJ22_08690) - 1784001..1784786 (+) 786 WP_065338395.1 carbon-nitrogen family hydrolase -
  AVJ22_RS08710 (AVJ22_08695) - 1785546..1786115 (+) 570 WP_065338396.1 accessory gene regulator AgrB -
  AVJ22_RS08715 (AVJ22_08700) agrD 1786118..1786255 (+) 138 WP_065338397.1 cyclic lactone autoinducer peptide AgrD -
  AVJ22_RS08720 (AVJ22_08705) agrC 1786279..1787574 (+) 1296 WP_065338398.1 quorum-sensing sensor histidine kinase AgrC -
  AVJ22_RS08725 (AVJ22_08710) agrA 1787587..1788303 (+) 717 WP_065338399.1 quorum-sensing response regulator AgrA Regulator
  AVJ22_RS08730 (AVJ22_08715) - 1788340..1789308 (-) 969 WP_065338400.1 carbohydrate kinase family protein -
  AVJ22_RS08735 (AVJ22_08720) - 1789305..1790789 (-) 1485 WP_065338401.1 sucrose-6-phosphate hydrolase -
  AVJ22_RS08740 (AVJ22_08725) - 1790882..1791844 (-) 963 WP_065338402.1 LacI family DNA-binding transcriptional regulator -
  AVJ22_RS08745 (AVJ22_08730) - 1791988..1792215 (-) 228 WP_065338403.1 sulfurtransferase TusA family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27930.71 Da        Isoelectric Point: 4.8759

>NTDB_id=164293 AVJ22_RS08725 WP_065338399.1 1787587..1788303(+) (agrA) [Staphylococcus equorum strain C2014]
MKIFICEDDERQRENMISIINNYIMIEEKPMEIEVATADPYEVLERSKDLSDIGCYFLDIQLEADINGIKLASEIRNHDP
VGNIIFVTSHSELTYLTFVYKIAAMDFIFKDDPDELKSRIIDCLETSESRLKLLSKESTVETIELKRGSNSVYVQYDDVM
FFESSTKSHRLIAHLDNRQIEFYGNLKELNQLDDRFFRCHNSFVVNRHNIESIDSKSRIVYFKNQEHCFASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=164293 AVJ22_RS08725 WP_065338399.1 1787587..1788303(+) (agrA) [Staphylococcus equorum strain C2014]
ATGAAGATATTCATATGTGAAGATGATGAAAGACAACGTGAGAATATGATTTCGATTATCAACAACTACATCATGATTGA
AGAGAAACCGATGGAAATTGAAGTTGCAACTGCTGATCCTTATGAAGTTTTAGAACGTTCTAAAGATTTAAGTGATATAG
GGTGTTACTTTTTAGATATACAATTGGAAGCTGACATTAACGGTATCAAGCTTGCTAGTGAAATTCGCAACCACGATCCT
GTAGGTAATATCATTTTTGTTACAAGTCATAGCGAGCTTACATATCTTACTTTTGTTTATAAAATAGCAGCGATGGACTT
TATTTTTAAAGATGATCCAGATGAATTAAAATCTAGAATCATTGATTGTTTAGAAACTTCAGAATCTAGGTTAAAATTAC
TTTCTAAAGAAAGCACTGTTGAAACAATTGAATTAAAACGTGGAAGTAATTCAGTATATGTTCAATATGATGATGTTATG
TTTTTTGAGTCCTCTACTAAATCTCATCGATTGATTGCGCACTTAGACAACAGACAAATTGAATTCTATGGTAACCTTAA
AGAACTTAACCAACTTGATGATAGATTCTTTAGGTGTCATAACAGTTTCGTTGTTAATAGACATAATATTGAATCTATTG
ATTCAAAATCTCGCATTGTTTATTTCAAAAATCAAGAACATTGCTTTGCTTCAGTAAGAAATGTAAAAAAAATATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

85.714

100

0.857

Multiple sequence alignment