Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AVJ22_RS01355 Genome accession   NZ_CP013714
Coordinates   291634..293010 (+) Length   458 a.a.
NCBI ID   WP_065337325.1    Uniprot ID   -
Organism   Staphylococcus equorum strain C2014     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 286634..298010
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVJ22_RS01335 (AVJ22_01330) - 286783..287244 (+) 462 WP_065337322.1 CtsR family transcriptional regulator -
  AVJ22_RS01340 (AVJ22_01335) - 287261..287812 (+) 552 WP_002511349.1 UvrB/UvrC motif-containing protein -
  AVJ22_RS01345 (AVJ22_01340) - 287805..288815 (+) 1011 WP_065337323.1 protein arginine kinase -
  AVJ22_RS01350 (AVJ22_01345) - 288827..291289 (+) 2463 WP_065337324.1 ATP-dependent Clp protease ATP-binding subunit -
  AVJ22_RS01355 (AVJ22_01350) radA 291634..293010 (+) 1377 WP_065337325.1 DNA repair protein RadA Machinery gene
  AVJ22_RS01360 (AVJ22_01355) - 293084..294142 (+) 1059 WP_065337326.1 PIN/TRAM domain-containing protein -
  AVJ22_RS01365 (AVJ22_01360) gltX 294591..296048 (+) 1458 WP_065337327.1 glutamate--tRNA ligase -
  AVJ22_RS01370 (AVJ22_01365) cysE 296395..297036 (+) 642 WP_031266086.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 50695.27 Da        Isoelectric Point: 7.4849

>NTDB_id=164271 AVJ22_RS01355 WP_065337325.1 291634..293010(+) (radA) [Staphylococcus equorum strain C2014]
MAKKKVVFECMACGYQSAKWMGKCPNCGGWNQMEEIVEQKAASPKHGVRSRDRDNVSKVQKLNEIKQETTPRVKTKSDEF
NRVLGGGIVNGSLVLIGGDPGIGKSTLLLQICAALSQSHNVLYITGEESLNQTKLRAERLDEDSRELNVFAETDLEVIHE
TVKQLKPDLLVVDSIQTIFHPEISSAPGSVSQVRESTQSLMNIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFE
GDEHHAYRILRAVKNRFGSTNEMGIFEMKQSGLKGVKNPSEMFLEERSTNVPGSTIVSTMEGTRPLLIEVQALVTPTTFN
NPRRMATGIDHNRLSLLMAVLEKKENYLLQQQDAYIKVAGGVRLTEPAVDLGIIVATASSFKDLTVDGLDCFIGEVGLTG
EVRRVSRIEQRVQEAEKLGFKRIIIPESNIGGWQFPSDIKVIGVKSVHEALKYALTKH

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=164271 AVJ22_RS01355 WP_065337325.1 291634..293010(+) (radA) [Staphylococcus equorum strain C2014]
GTGGCCAAGAAGAAAGTTGTTTTTGAATGTATGGCATGTGGCTACCAGTCCGCAAAATGGATGGGCAAATGTCCAAATTG
TGGTGGCTGGAACCAAATGGAAGAAATTGTTGAGCAAAAGGCGGCAAGTCCAAAACATGGCGTGCGCAGTCGTGATCGCG
ATAACGTTTCAAAAGTACAGAAGTTAAATGAAATTAAACAAGAGACGACACCACGTGTTAAAACCAAGTCAGACGAATTT
AATCGTGTGCTCGGCGGAGGTATCGTTAATGGTTCACTCGTATTGATTGGTGGAGATCCTGGTATAGGGAAATCAACATT
ACTATTACAAATATGTGCTGCACTATCACAATCGCATAACGTCTTATACATAACAGGTGAGGAATCATTAAATCAAACTA
AGCTAAGAGCTGAAAGATTGGATGAAGATTCAAGGGAACTTAATGTATTTGCAGAAACTGATTTAGAAGTCATTCACGAG
ACAGTAAAACAATTAAAGCCGGATTTACTCGTAGTTGACTCAATCCAAACGATATTCCATCCGGAAATTAGTTCAGCACC
AGGCTCAGTGTCTCAAGTAAGAGAAAGTACACAAAGCTTAATGAACATTGCTAAGCAAATGAATATTGCAACATTTATTG
TGGGACATGTAACAAAAGAAGGTCAAATTGCTGGTCCACGTTTATTAGAACACATGGTAGATACAGTACTTTATTTCGAA
GGTGATGAACACCATGCATATCGTATTTTGAGAGCGGTGAAAAACCGTTTTGGTTCTACAAATGAAATGGGTATTTTTGA
AATGAAACAAAGCGGATTGAAAGGTGTTAAAAATCCATCCGAGATGTTTTTAGAAGAACGTTCGACAAATGTGCCCGGCT
CGACTATCGTCTCTACAATGGAAGGCACGAGACCCTTACTCATAGAAGTTCAAGCCCTTGTTACGCCAACGACTTTTAAT
AATCCTAGACGGATGGCAACGGGTATTGATCACAACCGTTTGAGTCTGTTGATGGCAGTATTGGAGAAAAAAGAAAATTA
TTTACTTCAACAACAAGATGCGTATATTAAAGTTGCAGGTGGTGTAAGATTAACAGAACCTGCTGTTGATTTAGGTATAA
TTGTGGCAACTGCTTCAAGCTTTAAAGATCTAACAGTAGATGGTTTAGATTGTTTTATAGGAGAAGTTGGACTGACTGGA
GAGGTGAGACGAGTATCTCGTATAGAGCAACGTGTACAGGAAGCAGAGAAACTCGGATTTAAACGTATTATTATTCCAGA
ATCCAATATTGGCGGATGGCAATTCCCTAGTGATATTAAGGTCATTGGCGTGAAAAGTGTTCACGAAGCCTTAAAATACG
CTTTGACAAAACATTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(362-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(67-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

64.912

99.563

0.646
  radA Streptococcus pneumoniae Rx1

59.071

98.69

0.583
  radA Streptococcus pneumoniae D39

59.071

98.69

0.583
  radA Streptococcus pneumoniae R6

59.071

98.69

0.583
  radA Streptococcus pneumoniae TIGR4

59.071

98.69

0.583
  radA Streptococcus mitis SK321

59.071

98.69

0.583
  radA Streptococcus mitis NCTC 12261

59.071

98.69

0.583

Multiple sequence alignment