Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   RSJ2_RS05570 Genome accession   NZ_CP013707
Coordinates   1141962..1142915 (+) Length   317 a.a.
NCBI ID   WP_021136621.1    Uniprot ID   -
Organism   Clostridium botulinum strain F634     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1136962..1147915
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RSJ2_RS05545 (RSJ2_1068) - 1137093..1137329 (+) 237 WP_003361003.1 SHOCT domain-containing protein -
  RSJ2_RS05550 (RSJ2_1069) - 1137589..1138290 (+) 702 WP_024931741.1 response regulator transcription factor -
  RSJ2_RS05555 (RSJ2_1070) - 1138290..1139696 (+) 1407 WP_024931740.1 sensor histidine kinase -
  RSJ2_RS05560 (RSJ2_1071) - 1140036..1140722 (-) 687 WP_011987957.1 DNA alkylation repair protein -
  RSJ2_RS05565 (RSJ2_1072) - 1140958..1141716 (-) 759 WP_003388491.1 helix-turn-helix domain-containing protein -
  RSJ2_RS05570 (RSJ2_1073) ceuB 1141962..1142915 (+) 954 WP_021136621.1 ABC transporter permease Machinery gene
  RSJ2_RS05575 (RSJ2_1074) - 1142905..1143855 (+) 951 WP_024931739.1 iron chelate uptake ABC transporter family permease subunit -
  RSJ2_RS05580 (RSJ2_1075) - 1143852..1144607 (+) 756 WP_061323618.1 ABC transporter ATP-binding protein -
  RSJ2_RS05585 (RSJ2_1076) - 1144681..1145625 (+) 945 WP_011948721.1 siderophore ABC transporter substrate-binding protein -
  RSJ2_RS05595 (RSJ2_1077) - 1145828..1146829 (+) 1002 WP_021136622.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34886.24 Da        Isoelectric Point: 10.0382

>NTDB_id=164227 RSJ2_RS05570 WP_021136621.1 1141962..1142915(+) (ceuB) [Clostridium botulinum strain F634]
MKKRYLILALIILSICSIFIGVKDISFIDIFNSDDVKLKVLLISRIPRLISIIVVGVSMSIAGLIMQQISRNKFVSPDTA
STIDSAKLGVLVALMIFPSATLTEKMIVSFIFSLLGTFLFMKILKKIKVKNSIFIPLVGIMLGNIIDSITTFFAYKYNLI
QSISSWLQGDFSLIIKGNYELIYFSLPLVVIAFIYANKFTVAGMGEDFSKNLGVNYNRIINIGLVIVALISSLVVITVGK
IPFLGLIVPNIVTLYKGDNLKNSLCSTALLGAVFLLGCDILGRLVIYPYEISIGLVVGVIGSIVFLYLLFRRNGNEV

Nucleotide


Download         Length: 954 bp        

>NTDB_id=164227 RSJ2_RS05570 WP_021136621.1 1141962..1142915(+) (ceuB) [Clostridium botulinum strain F634]
ATGAAAAAGAGATATTTAATTTTAGCATTAATTATTTTATCTATTTGTTCAATATTTATTGGAGTAAAAGATATTAGCTT
TATAGATATATTTAATTCAGATGATGTGAAGCTTAAGGTATTATTAATTAGTAGAATCCCAAGACTTATAAGTATTATTG
TAGTAGGGGTTAGTATGAGTATAGCAGGACTTATTATGCAACAAATAAGTCGAAATAAATTTGTATCTCCAGATACAGCT
TCAACTATAGATAGTGCAAAGCTCGGGGTTTTAGTTGCTTTAATGATATTTCCTTCAGCAACTCTTACTGAAAAAATGAT
AGTTTCCTTTATATTTTCTTTATTAGGTACATTCTTATTTATGAAAATTTTAAAGAAAATAAAAGTTAAAAATTCTATCT
TCATACCACTCGTAGGTATAATGCTTGGAAATATAATAGATTCAATAACTACGTTTTTTGCATATAAATATAATCTTATT
CAGAGTATTTCCTCTTGGCTTCAAGGTGATTTTTCTTTAATTATTAAAGGAAATTATGAACTTATATATTTTAGTCTACC
ACTTGTAGTCATAGCCTTTATTTATGCTAATAAATTTACAGTAGCAGGTATGGGAGAGGATTTTTCCAAGAATTTAGGTG
TTAATTATAACAGAATCATAAATATAGGACTTGTAATAGTAGCATTAATATCTTCACTAGTAGTTATTACTGTAGGAAAA
ATACCATTCCTAGGTCTTATAGTACCTAATATAGTTACTCTTTATAAAGGGGATAATTTAAAAAATAGTCTTTGTAGTAC
AGCATTGCTTGGAGCAGTATTTCTCTTAGGTTGTGACATATTAGGTAGGTTAGTTATTTATCCCTATGAGATATCTATAG
GACTTGTAGTTGGAGTTATAGGAAGTATAGTATTCCTTTATCTCTTGTTTAGGAGGAATGGCAATGAAGTGTAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.447

98.107

0.505

Multiple sequence alignment