Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   RSJ3_RS14320 Genome accession   NZ_CP013705
Coordinates   2978804..2979757 (-) Length   317 a.a.
NCBI ID   WP_075142210.1    Uniprot ID   -
Organism   Clostridium botulinum strain F160     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2973804..2984757
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RSJ3_RS14295 (RSJ3_2805) - 2974891..2975892 (-) 1002 WP_061311299.1 helix-turn-helix domain-containing protein -
  RSJ3_RS14305 (RSJ3_2806) - 2976094..2977038 (-) 945 WP_075142208.1 siderophore ABC transporter substrate-binding protein -
  RSJ3_RS14310 (RSJ3_2807) - 2977112..2977867 (-) 756 WP_011948720.1 ABC transporter ATP-binding protein -
  RSJ3_RS14315 (RSJ3_2808) - 2977864..2978814 (-) 951 WP_075142209.1 iron chelate uptake ABC transporter family permease subunit -
  RSJ3_RS14320 (RSJ3_2809) ceuB 2978804..2979757 (-) 954 WP_075142210.1 ABC transporter permease Machinery gene
  RSJ3_RS14325 (RSJ3_2810) - 2980003..2980761 (+) 759 WP_075142211.1 helix-turn-helix domain-containing protein -
  RSJ3_RS14330 (RSJ3_2811) - 2980997..2981683 (+) 687 WP_075142212.1 DNA alkylation repair protein -
  RSJ3_RS14335 (RSJ3_2812) - 2982023..2983429 (-) 1407 WP_071647865.1 sensor histidine kinase -
  RSJ3_RS14340 (RSJ3_2813) - 2983429..2984130 (-) 702 WP_075142213.1 response regulator transcription factor -
  RSJ3_RS14345 (RSJ3_2814) - 2984400..2984636 (-) 237 WP_075142214.1 SHOCT domain-containing protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34947.30 Da        Isoelectric Point: 9.9651

>NTDB_id=164221 RSJ3_RS14320 WP_075142210.1 2978804..2979757(-) (ceuB) [Clostridium botulinum strain F160]
MKKRYLILTLIILSICSIFIGVKDISFIDIFNSDDVKLKVLLISRIPRLISIIVVGVSMSIAGLIMQQISRNKFVSPDTA
STIDSAKLGVLVALMIFPSATLTEKMIVSFIFSLLGTFLFMKILKKIKVKNSIFIPLVGIMLGNIIDSITTFFAYKYDLI
QSIASWLQGDFSLIIRGNYELIYFSLPLVVIAFIYANKFTVAGMGEDFSKNLGVNYNRIINIGLVIVALISSLVVITVGK
IPFLGLIVPNIVTLYKGDNLKNSLCSTALLGAVFLLGCDILGRLVIYPYEISIGLVVGVIGSMVFLYLLFRRNGNEV

Nucleotide


Download         Length: 954 bp        

>NTDB_id=164221 RSJ3_RS14320 WP_075142210.1 2978804..2979757(-) (ceuB) [Clostridium botulinum strain F160]
ATGAAAAAGAGATATTTAATTTTGACATTAATTATTTTATCTATTTGTTCAATATTTATTGGAGTAAAAGATATTAGCTT
TATAGATATATTTAATTCAGATGATGTGAAGCTTAAGGTATTATTAATTAGTAGAATCCCAAGACTTATAAGTATTATTG
TAGTAGGGGTTAGTATGAGTATAGCAGGACTTATTATGCAACAAATAAGTCGAAATAAATTTGTATCTCCAGATACAGCT
TCAACTATAGATAGTGCAAAGCTTGGGGTTTTAGTTGCTTTAATGATATTTCCTTCAGCAACTCTTACTGAAAAAATGAT
AGTTTCCTTTATATTTTCTTTATTAGGTACATTCTTATTTATGAAAATTTTAAAGAAAATAAAAGTTAAAAATTCTATCT
TCATACCACTCGTAGGTATAATGCTTGGAAATATAATAGATTCAATAACTACGTTTTTTGCATATAAATATGATCTTATT
CAAAGTATTGCCTCTTGGCTTCAAGGTGATTTTTCTTTAATTATTAGAGGAAATTATGAACTTATATATTTTAGTCTACC
ACTTGTAGTCATAGCCTTTATTTATGCTAACAAATTCACAGTAGCAGGTATGGGAGAGGATTTTTCTAAGAATTTAGGTG
TTAATTATAACAGAATCATAAATATAGGACTTGTAATAGTAGCATTAATATCTTCACTAGTAGTTATTACTGTAGGAAAA
ATACCATTCCTAGGTCTTATAGTACCTAATATAGTTACTCTTTATAAAGGGGATAATTTAAAAAATAGTCTTTGTAGTAC
AGCATTGCTTGGAGCAGTATTTCTCTTAGGTTGTGACATATTAGGTAGGTTAGTTATTTATCCCTATGAGATATCTATAG
GACTTGTAGTTGGAGTTATAGGAAGTATGGTATTCCTTTATCTCTTGTTTAGGAGGAATGGCAATGAAGTGTAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.125

98.107

0.502

Multiple sequence alignment