Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   AT984_RS17065 Genome accession   NZ_CP013692
Coordinates   3980231..3981745 (+) Length   504 a.a.
NCBI ID   WP_058721130.1    Uniprot ID   A0A0U3EF64
Organism   Paucibacter sp. KCTC 42545     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3975231..3986745
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AT984_RS17040 (AT984_17040) argS 3975481..3977202 (+) 1722 WP_058721126.1 arginine--tRNA ligase -
  AT984_RS17045 (AT984_17045) - 3977199..3977921 (+) 723 WP_058721127.1 SPOR domain-containing protein -
  AT984_RS17050 (AT984_17050) - 3977976..3978641 (+) 666 WP_231741450.1 thiol:disulfide interchange protein DsbA/DsbL -
  AT984_RS17055 (AT984_17055) lptA 3978781..3979455 (+) 675 WP_197418148.1 lipopolysaccharide transport periplasmic protein LptA -
  AT984_RS17060 (AT984_17060) lptB 3979452..3980231 (+) 780 WP_058721129.1 LPS export ABC transporter ATP-binding protein -
  AT984_RS17065 (AT984_17065) rpoN/rpoN1 3980231..3981745 (+) 1515 WP_058721130.1 RNA polymerase factor sigma-54 Machinery gene
  AT984_RS17070 (AT984_17070) - 3981811..3984627 (+) 2817 WP_082680122.1 EAL domain-containing protein -
  AT984_RS17075 (AT984_17075) - 3984785..3986095 (+) 1311 WP_058721132.1 THUMP domain-containing protein -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 55579.80 Da        Isoelectric Point: 4.6755

>NTDB_id=164106 AT984_RS17065 WP_058721130.1 3980231..3981745(+) (rpoN/rpoN1) [Paucibacter sp. KCTC 42545]
MKQSLQLRLSQHLSLTPQLQQSIRLLQLSTLELNQEIEQMMAQNPLLDTEDDISVAAPEISEPLRASAADDSSADTELGG
GADAESTPELRAEDFGSTERDDWENGTERDDFDGIRELPSNHNSGSASNDGDDDRSEQEFAEISLQEHLNQQLAGMHLSQ
ADRMALQVLIESLGEDGYLEDTLEDIAQALTTDAEEQEELLDHLRIALKWLQNMDPGGVGARDLAECLTLQLRALPRSPA
QVIAILICKSHLELLAKRDSKKLMALTGADEPLLREAQALIRALDPKPGRRFAQGQSQAVIPDVIVRKVGRELRVMLNPE
VAPKLRINEMYANALRQTRGGISNSALGGQLQEARWFIKNIQQRFDTILRVSKAIVERQKGFFTHGALAMKPLVLREIAD
ELGLHESTISRVTTAKYMATTFGTFELKYFFGSGLSTEAGGNASSTAVRALIKQFVEAEAPNKPLSDSALANMLEEQGIQ
VARRTVAKYREALKIAPANLRKPC

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=164106 AT984_RS17065 WP_058721130.1 3980231..3981745(+) (rpoN/rpoN1) [Paucibacter sp. KCTC 42545]
ATGAAACAGTCGCTCCAGCTGCGCCTGAGCCAGCATCTCTCGCTGACCCCGCAATTGCAGCAATCGATCCGGCTGCTGCA
ACTCTCGACCCTGGAGCTGAACCAGGAAATCGAGCAAATGATGGCGCAGAACCCTCTGCTCGATACCGAGGATGACATCA
GCGTGGCCGCGCCCGAGATCAGCGAGCCGCTACGCGCCAGCGCCGCCGACGACAGCAGCGCCGACACCGAGCTGGGCGGC
GGCGCCGACGCCGAGAGCACGCCGGAGTTGCGGGCCGAAGACTTCGGTAGCACCGAGCGCGACGACTGGGAGAACGGCAC
CGAGCGCGATGACTTCGACGGCATCCGCGAGCTGCCCAGCAACCACAACAGCGGCAGCGCCAGCAATGACGGCGACGACG
ATCGCAGCGAGCAGGAGTTCGCCGAAATCAGCCTGCAAGAGCATTTGAATCAGCAGCTGGCCGGCATGCACCTCAGCCAG
GCCGACCGCATGGCCTTGCAAGTGCTGATTGAGTCGCTGGGCGAAGACGGCTACCTGGAAGACACACTGGAAGACATCGC
CCAAGCGCTCACCACTGATGCCGAGGAACAAGAAGAGCTGCTGGACCATCTGCGCATCGCCCTGAAGTGGTTGCAGAACA
TGGACCCCGGCGGCGTCGGCGCACGCGACCTGGCCGAGTGCCTAACGCTGCAATTGCGCGCACTACCGCGCAGCCCGGCG
CAGGTGATCGCCATCCTGATTTGCAAATCACATCTGGAACTGCTGGCCAAGCGCGATAGCAAAAAGCTGATGGCGCTGAC
CGGTGCCGACGAGCCCCTGCTGCGCGAAGCGCAAGCGCTGATCCGCGCCCTCGACCCCAAACCGGGGCGGCGCTTCGCGC
AAGGCCAGTCGCAGGCAGTGATCCCGGATGTGATCGTGCGCAAGGTCGGCCGCGAGCTGCGCGTGATGCTCAACCCCGAG
GTCGCCCCCAAGCTGCGCATCAATGAGATGTATGCCAACGCCCTGCGGCAAACCCGCGGCGGCATCAGCAATAGCGCGCT
GGGTGGCCAGCTGCAGGAAGCGCGCTGGTTCATTAAAAACATCCAGCAGCGCTTCGACACCATTTTGCGTGTCTCCAAAG
CCATCGTGGAGCGGCAAAAAGGCTTCTTCACCCACGGTGCCCTGGCCATGAAGCCCCTGGTGCTGCGCGAGATTGCCGAC
GAGCTGGGCCTGCACGAGTCCACCATCTCACGCGTCACCACCGCCAAATACATGGCCACCACCTTCGGCACTTTTGAGCT
GAAGTACTTCTTCGGCTCGGGCCTGAGCACCGAGGCCGGCGGCAATGCCTCCAGCACCGCCGTGCGCGCGCTGATCAAGC
AATTCGTTGAGGCGGAAGCGCCGAACAAGCCGCTGTCTGACAGCGCCTTGGCCAACATGCTGGAAGAGCAAGGCATCCAG
GTGGCGCGGCGCACCGTGGCGAAATACCGCGAAGCGCTGAAGATCGCCCCCGCCAATTTGCGCAAACCCTGCTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(349-502)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(141-331)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0U3EF64

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

53.714

100

0.56

Multiple sequence alignment