Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   AU077_RS06385 Genome accession   NZ_CP013688
Coordinates   1290945..1292747 (-) Length   600 a.a.
NCBI ID   WP_058621775.1    Uniprot ID   A0A380K4L2
Organism   Streptococcus gallolyticus strain ICDDRB-NRC-S1     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1285945..1297747
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AU077_RS06365 (AU077_06365) - 1287873..1288895 (-) 1023 WP_039670593.1 peptidyl-prolyl cis-trans isomerase -
  AU077_RS06370 (AU077_06370) - 1288965..1289666 (-) 702 WP_014294218.1 O-methyltransferase -
  AU077_RS06375 (AU077_06375) - 1289720..1290331 (-) 612 WP_014294217.1 HAD-IA family hydrolase -
  AU077_RS06380 (AU077_06380) - 1290353..1290871 (-) 519 Protein_1305 GNAT family N-acetyltransferase -
  AU077_RS06385 (AU077_06385) pepF 1290945..1292747 (-) 1803 WP_058621775.1 oligoendopeptidase F Regulator
  AU077_RS06390 (AU077_06390) - 1292737..1293708 (-) 972 WP_014294215.1 competence protein CoiA -
  AU077_RS06395 (AU077_06395) - 1293761..1294477 (-) 717 WP_039670589.1 pseudouridine synthase -
  AU077_RS06400 (AU077_06400) nagB 1294553..1295257 (-) 705 WP_014294213.1 glucosamine-6-phosphate deaminase -
  AU077_RS06405 (AU077_06405) - 1295385..1295843 (-) 459 WP_223246245.1 VIT1/CCC1 transporter family protein -
  AU077_RS06410 (AU077_06410) queA 1296060..1297088 (+) 1029 WP_058621776.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 68896.90 Da        Isoelectric Point: 4.6015

>NTDB_id=164054 AU077_RS06385 WP_058621775.1 1290945..1292747(-) (pepF) [Streptococcus gallolyticus strain ICDDRB-NRC-S1]
MSDNRSHIDEKDQWDLSTVFATDDAWEAELASLDGDLENAKAYKGRLTASSNDLLAITESYLSLSRRLEKLYVYASMKND
QDTTVAKYQEYQAKATAIYAKFSEIFAFYEPELMQLSKEAFEDFVAETPALSAYAHFFEQLFKRQPHVLSQAEEELLAGA
QEIFGAAGETFELLDNADIIFPIVLDDKGKEIQLTHGNFITLLESKNRDVRKEAYQALYATYEQFQHTYAKTLQTNVKVH
NYEARVHHFKSAREAALSANFIPESVYDTLIETVNANLPLLHRYVELRKKILKLDDLKMYDIHTPLSEMDMSFTYEEALA
KAEDVLAVFGKEYSERVHRAFTERWIDVHVNKGKRSGAYSGGSYDTNAFILLNWQDTLDNLFTLVHETGHSLHSTFTREN
QPYVYGDYSIFLAEIASTTNENILTETLLKEVDDDKARFAILNHYLDGFKSTIFRQAQFAEFEDIIHKADQAGEVLTSDY
LNQLYADLNEKYYGLSKADNPEIQYEWARIPHFYYNYYVYQYATGFAAASYLADKIVHGTQADIDRYLDYLKAGNSDYPL
NVIKKAGVDMTTSAYLDAAFRIFEERLDELEALIEKGAHL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=164054 AU077_RS06385 WP_058621775.1 1290945..1292747(-) (pepF) [Streptococcus gallolyticus strain ICDDRB-NRC-S1]
ATGTCAGATAATCGTAGTCATATTGATGAAAAAGACCAATGGGATTTAAGCACAGTTTTTGCCACAGATGATGCTTGGGA
AGCGGAGCTGGCTAGCCTTGATGGTGATTTAGAAAATGCTAAAGCTTACAAAGGGCGTTTGACAGCGTCAAGTAATGATT
TGCTTGCTATTACGGAAAGTTACCTTTCCTTGTCGCGTCGTTTGGAGAAGCTTTATGTTTATGCTTCAATGAAAAACGAC
CAAGATACAACAGTAGCCAAATACCAAGAATACCAAGCTAAAGCAACAGCAATCTATGCCAAGTTTAGTGAAATTTTTGC
TTTTTACGAACCTGAATTGATGCAATTGTCTAAAGAAGCTTTTGAGGATTTCGTGGCAGAAACACCAGCTTTATCTGCTT
ATGCACATTTCTTTGAGCAACTTTTCAAACGTCAACCGCATGTTTTGTCACAGGCTGAGGAAGAATTATTAGCAGGTGCG
CAAGAAATTTTTGGAGCTGCAGGAGAAACATTTGAGCTTTTGGATAATGCTGACATCATTTTTCCAATCGTTCTAGATGA
TAAGGGCAAAGAAATTCAGCTAACGCATGGTAATTTCATTACCTTGTTAGAATCAAAAAATCGTGATGTCCGCAAAGAAG
CTTACCAAGCTTTGTATGCAACTTATGAACAATTCCAACACACTTATGCGAAAACCTTGCAAACCAATGTCAAAGTGCAT
AACTATGAAGCTCGTGTTCATCATTTTAAATCAGCACGTGAGGCAGCACTTTCGGCTAATTTTATTCCAGAATCTGTTTA
TGATACCCTGATTGAAACGGTCAATGCTAACCTGCCTTTGCTTCATCGTTATGTGGAACTTCGCAAGAAAATCCTTAAAC
TGGATGATTTGAAAATGTACGATATTCATACGCCACTTTCTGAAATGGATATGAGTTTTACCTATGAAGAAGCTTTGGCA
AAAGCTGAAGATGTCTTAGCTGTTTTTGGCAAAGAATATTCTGAGCGTGTTCATCGTGCTTTTACAGAACGCTGGATTGA
CGTCCATGTCAATAAAGGCAAACGCTCTGGTGCCTACTCTGGTGGTTCGTATGATACCAATGCTTTCATATTGTTAAATT
GGCAAGATACCTTGGATAATTTGTTTACCTTAGTTCACGAAACGGGGCACAGCTTGCATTCGACATTTACACGTGAAAAT
CAACCCTATGTTTATGGAGATTATAGTATTTTCTTGGCAGAAATTGCTTCAACAACTAATGAAAATATTTTGACAGAAAC
ACTTTTGAAAGAAGTTGATGATGACAAAGCACGCTTTGCAATTTTGAATCATTATCTTGATGGTTTCAAGAGTACTATTT
TCCGTCAAGCACAATTTGCGGAATTTGAAGATATTATCCATAAGGCAGACCAAGCTGGAGAAGTGTTGACGAGTGATTAT
CTCAACCAACTTTATGCCGACTTAAACGAGAAATATTATGGACTCAGCAAAGCAGACAACCCAGAAATCCAATACGAATG
GGCACGCATTCCGCATTTCTACTACAATTACTATGTTTACCAATACGCCACAGGATTTGCGGCAGCTAGTTATTTAGCTG
ATAAGATTGTTCACGGTACACAAGCTGATATTGACCGCTACCTTGATTATTTGAAAGCAGGTAATTCTGATTATCCGCTT
AATGTGATTAAAAAAGCTGGTGTGGATATGACAACAAGTGCTTATCTAGACGCTGCTTTCCGAATTTTCGAGGAACGCTT
GGATGAGTTGGAAGCTTTAATTGAAAAAGGGGCACATCTATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A380K4L2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

70.5

100

0.705

Multiple sequence alignment