Detailed information NTG0164047

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: AU077_RS03970
• Genome accession: NZ_CP013688
• Coordinates: 789473..791581 (-)
• Length: 702 a.a.
• NCBI ID: WP_058621609.1
• Uniprot ID: -
• Organism: Streptococcus gallolyticus strain ICDDRB-NRC-S1
• Function: degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 784473..796581

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AU077_RS03945 (AU077_03945)	yihA	784671..785264 (+)	594	WP_058621607.1	ribosome biogenesis GTP-binding protein YihA/YsxC	-
AU077_RS03950 (AU077_03950)	-	785563..786939 (+)	1377	WP_058621608.1	amino acid permease	-
AU077_RS03955 (AU077_03955)	mmuM	786952..787899 (+)	948	WP_014294682.1	homocysteine S-methyltransferase	-
AU077_RS03960 (AU077_03960)	-	787943..788610 (-)	668	Protein_805	YoaK family protein	-
AU077_RS03965 (AU077_03965)	-	788719..789366 (-)	648	Protein_806	endonuclease III domain-containing protein	-
AU077_RS03970 (AU077_03970)	clpC	789473..791581 (-)	2109	WP_058621609.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
AU077_RS03975 (AU077_03975)	-	792031..792453 (-)	423	Protein_808	helix-turn-helix domain-containing protein	-
AU077_RS03980 (AU077_03980)	rplJ	792766..793269 (+)	504	WP_014294677.1	50S ribosomal protein L10	-
AU077_RS03985 (AU077_03985)	rplL	793349..793714 (+)	366	WP_014294676.1	50S ribosomal protein L7/L12	-

Sequence

Protein

• Length: 702 a.a.
• Molecular weight: 77374.22 Da
• Isoelectric Point: 4.7610

>NTDB_id=164047 AU077_RS03970 WP_058621609.1 789473..791581(-) (clpC) [Streptococcus gallolyticus strain ICDDRB-NRC-S1]
MANNNFYGRDPFGDMDDIFNRLMGNMGGYNSENRRYLINGREVTPEEFAQYRQTGKLPRNAEYQEGAPTSAPKEDGLLAK
LGTNLTERARANELDPVIGRNKEIQETAEVLSRRTKNNAVLVGDAGVGKTAVVEGLAQAIVNGDVPAAIKNKEIISIDIS
GLEAGTQYRGAFEENIQNLIKEVKDAGNIILFFDEIHQILGAGSTGGDSGSKGLADILKPALSRGELTVIGATTQDEYRN
TILKNAALARRFNEVKVNAPSAQDTFNILMGIRDLYEKHHNVILPDNVLKAAVDFSIQYIPQRSLPDKAIDLIDMTAAHL
AAQHPATDVKSLEKEIADQEEKLENAVAKEDYEAALSAKARIEELQKQIDNHTEGQKVTATVDDVAESVERLTGIPVSNM
GASDIERLKDLASRLKSKVIGQDKAVEAVSRAIRRNRAGFDEGNRPIGSFLFVGPTGVGKTELAKQLALDMFGSKDAIIR
LDMSEYSDRTAVSKLIGTTAGYVGYDDNSNTLTERVRRNPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTIDFK
NTVIIATSNAGFGNEALTGQDDKDKKIMDRIAPYFRPEFLNRFDGIIEFSHLTKEDLNHIVDLMLDEVNKTIAKKGIDLV
VSDAAKQYLIEEGYDEAMGARPLRRVIEREIRDKITDFYLDHPDVKHLKADMVDGELVISEK

Nucleotide

• Length: 2109 bp

>NTDB_id=164047 AU077_RS03970 WP_058621609.1 789473..791581(-) (clpC) [Streptococcus gallolyticus strain ICDDRB-NRC-S1]
ATGGCAAATAATAATTTTTACGGAAGAGATCCTTTTGGAGATATGGATGACATTTTTAATAGACTTATGGGTAACATGGG
CGGCTACAATTCAGAAAACAGACGCTATTTGATTAATGGGCGCGAAGTTACTCCTGAAGAATTTGCACAATATCGCCAAA
CAGGTAAGCTTCCTAGAAACGCGGAATACCAAGAAGGGGCACCTACTTCTGCTCCTAAAGAAGATGGTCTCTTGGCAAAA
TTAGGAACAAACTTGACCGAACGCGCACGCGCTAACGAACTCGACCCTGTTATTGGACGTAACAAAGAAATCCAAGAAAC
TGCTGAAGTCTTGTCACGTCGTACCAAAAACAATGCTGTCCTTGTGGGGGATGCAGGTGTTGGTAAAACAGCCGTTGTCG
AAGGCTTAGCGCAAGCTATTGTCAATGGTGATGTGCCAGCAGCTATCAAAAATAAAGAAATTATTTCTATTGATATTTCT
GGTCTTGAAGCTGGCACACAATATCGTGGTGCTTTTGAAGAAAATATCCAAAACCTTATCAAGGAAGTTAAAGACGCTGG
TAATATCATTCTCTTCTTTGATGAAATCCACCAAATTTTAGGCGCAGGGTCAACTGGTGGCGACTCTGGTTCGAAAGGTT
TAGCTGACATTCTCAAACCTGCACTTTCTCGTGGCGAATTGACCGTTATCGGTGCAACAACTCAAGACGAATATCGTAAT
ACTATTTTGAAGAATGCTGCGCTTGCTCGCCGTTTCAACGAAGTCAAAGTAAATGCTCCTTCTGCTCAAGATACCTTTAA
TATTTTAATGGGAATTCGTGATTTATATGAGAAACACCACAACGTTATTCTCCCTGATAATGTGTTAAAAGCCGCTGTTG
ATTTTTCAATTCAATATATCCCACAACGTAGTTTACCAGATAAAGCTATTGACTTGATTGATATGACTGCTGCTCATTTG
GCTGCTCAACACCCTGCAACTGATGTCAAATCTCTTGAAAAGGAAATTGCAGACCAAGAAGAAAAACTAGAAAATGCTGT
GGCTAAAGAAGATTACGAGGCAGCTCTTAGTGCCAAGGCTCGTATCGAAGAATTGCAAAAACAAATTGATAACCATACAG
AAGGGCAAAAAGTTACAGCTACCGTTGATGATGTGGCAGAATCTGTCGAACGATTAACTGGTATTCCTGTGTCAAATATG
GGAGCAAGTGATATTGAACGCTTGAAAGATTTAGCTAGCCGTTTGAAAAGTAAAGTCATCGGACAAGATAAAGCTGTTGA
AGCCGTCTCACGTGCCATTCGTCGTAACCGTGCTGGTTTTGATGAAGGTAATCGACCAATTGGTAGCTTCCTCTTTGTCG
GTCCTACTGGCGTTGGTAAGACAGAGCTTGCTAAACAATTAGCCCTTGATATGTTCGGCTCAAAAGATGCTATTATCCGC
CTTGACATGTCTGAATACTCTGATCGCACAGCCGTTTCTAAATTAATCGGTACGACCGCTGGTTATGTTGGCTACGACGA
CAATAGCAACACGCTTACTGAACGTGTTCGTCGTAACCCATACTCAATTATTCTTCTTGATGAAATTGAAAAAGCTGACC
CTCAAGTCATCACACTTCTTCTCCAAGTTTTGGATGATGGTCGTTTGACAGACGGTCAAGGTAATACGATTGACTTTAAG
AATACCGTCATCATTGCTACCTCTAATGCTGGATTCGGCAACGAAGCTTTGACTGGTCAAGATGATAAAGATAAGAAAAT
TATGGATCGTATCGCTCCATACTTCCGCCCAGAATTTCTTAACCGTTTCGACGGTATTATCGAATTCTCTCACTTGACTA
AAGAAGATTTGAACCACATTGTTGACTTAATGCTTGACGAAGTTAACAAGACCATTGCCAAGAAAGGCATTGATTTGGTG
GTTAGTGATGCTGCTAAACAATACCTTATCGAAGAAGGTTATGATGAAGCCATGGGTGCTCGACCACTTCGCCGTGTCAT
TGAACGAGAAATCCGCGATAAAATCACTGATTTCTACCTCGATCACCCAGATGTTAAACACCTTAAAGCTGACATGGTTG
ACGGAGAACTAGTCATCAGCGAAAAATAA

Domains

Predicted by InterproScan.

• AAA lid domain (AAA_lid_9) (261-355)

• AAA domain (Cdc48 subfamily) (AAA_2) (445-604)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (612-682)

• ATPase family associated with various cellular activities (AAA) (AAA) (120-252)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Lactococcus lactis subsp. cremoris KW2	49.215	99.858	0.491
clpE	Streptococcus mutans UA159	50.549	90.741	0.459
clpE	Streptococcus pneumoniae TIGR4	49.921	90.456	0.452
clpE	Streptococcus pneumoniae Rx1	49.921	90.456	0.452
clpE	Streptococcus pneumoniae D39	49.921	90.456	0.452
clpE	Streptococcus pneumoniae R6	49.921	90.456	0.452
clpC	Bacillus subtilis subsp. subtilis str. 168	46.213	92.165	0.426
clpC	Streptococcus pneumoniae Rx1	43.86	89.316	0.392
clpC	Streptococcus pneumoniae D39	43.86	89.316	0.392
clpC	Streptococcus pneumoniae TIGR4	43.91	88.889	0.39
clpC	Streptococcus thermophilus LMD-9	44.032	88.319	0.389
clpC	Streptococcus thermophilus LMG 18311	43.851	88.034	0.386
clpC	Streptococcus mutans UA159	43.339	88.746	0.385
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	43.134	88.177	0.38