Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AU077_RS00335 Genome accession   NZ_CP013688
Coordinates   71328..72689 (+) Length   453 a.a.
NCBI ID   WP_039671282.1    Uniprot ID   A0A2G3NP60
Organism   Streptococcus gallolyticus strain ICDDRB-NRC-S1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 66328..77689
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AU077_RS00310 (AU077_00310) - 67046..68062 (-) 1017 WP_058621337.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  AU077_RS00315 (AU077_00315) - 68259..69026 (+) 768 WP_014295401.1 epoxyqueuosine reductase QueH -
  AU077_RS00325 (AU077_00325) - 70301..70747 (+) 447 WP_014295400.1 dUTP diphosphatase -
  AU077_RS00330 (AU077_00330) - 70778..71310 (+) 533 Protein_71 histidine phosphatase family protein -
  AU077_RS00335 (AU077_00335) radA 71328..72689 (+) 1362 WP_039671282.1 DNA repair protein RadA Machinery gene
  AU077_RS00340 (AU077_00340) - 72815..73309 (+) 495 WP_014295398.1 beta-class carbonic anhydrase -
  AU077_RS12035 (AU077_00345) - 73596..73975 (+) 380 Protein_74 hypothetical protein -
  AU077_RS00350 (AU077_00350) - 74106..75056 (+) 951 WP_014295395.1 magnesium transporter CorA family protein -
  AU077_RS00355 (AU077_00355) - 75476..76120 (+) 645 WP_230937566.1 IS6 family transposase -
  AU077_RS00360 (AU077_00360) - 76296..76583 (+) 288 WP_223246335.1 LURP-one-related/scramblase family protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49497.77 Da        Isoelectric Point: 6.0243

>NTDB_id=164030 AU077_RS00335 WP_039671282.1 71328..72689(+) (radA) [Streptococcus gallolyticus strain ICDDRB-NRC-S1]
MAKKKTTFICQECGYHSPKYLGRCPNCSSWTSFVEEVEVQEVKNARVSLTGEKSKPTKLKDVSSIHYSRTKTDMDEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSIQLADKGTVLYVSGEESAEQIKLRSERLGNIDNEFYLYAETNMQAIRAQIE
QIQPDFLIIDSIQTIMSPDISGVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGQLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSAIVVTMEGSRPILAEVQALVTPTVFGNAK
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTNPQEAFIGEIGLTGEIR
RVTRIEQRINEAAKLGFTKVYAPKNSLSGIDIPDNIQVIGVTTVGEVLKQVFA

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=164030 AU077_RS00335 WP_039671282.1 71328..72689(+) (radA) [Streptococcus gallolyticus strain ICDDRB-NRC-S1]
ATCGCTAAGAAAAAAACAACATTTATTTGTCAGGAGTGTGGCTATCATTCTCCGAAATATTTGGGTCGTTGTCCGAATTG
TTCGTCCTGGACGTCTTTTGTTGAAGAAGTTGAGGTGCAAGAAGTCAAAAATGCGCGTGTTAGTTTGACGGGTGAAAAGA
GTAAACCAACTAAGTTAAAGGATGTTAGCTCGATTCATTATTCCCGCACGAAGACTGACATGGATGAATTTAACCGCGTG
CTTGGTGGCGGTGTGGTGCCAGGTAGTTTGGTGCTTATCGGTGGTGACCCAGGTATCGGAAAATCAACTCTTCTTTTGCA
GGTATCTATTCAACTTGCAGATAAGGGAACGGTTCTTTACGTTTCTGGGGAAGAATCAGCAGAGCAGATTAAACTACGTA
GTGAGCGTCTCGGCAACATTGACAATGAATTTTACCTTTATGCTGAAACGAATATGCAAGCCATTCGCGCACAGATTGAG
CAAATTCAGCCTGATTTTTTGATTATTGACTCGATTCAGACAATTATGAGCCCCGATATTTCTGGGGTTCAAGGGTCGGT
ATCACAAGTACGTGAAGTGACCGCAGAGTTGATGCAACTGGCTAAGACAAATAATATTGCAACCTTTATTGTTGGTCACG
TGACTAAGGAAGGGCAGCTTGCAGGACCGCGCATGCTTGAGCATATGGTGGATACGGTGCTTTATTTTGAAGGGGAACGT
CATCACACCTTCCGTATTTTACGTGCTGTGAAAAATCGTTTTGGTTCAACTAACGAAATCGGCATTTTTGAAATGCAATC
TGGTGGTCTTGTTGAAGTGCTTAATCCGAGCCAAGTTTTCTTAGAAGAACGTTTGGATGGTGCAACGGGGTCAGCTATCG
TGGTTACCATGGAAGGTAGCCGTCCAATTTTGGCGGAAGTACAAGCTTTGGTAACGCCGACAGTCTTTGGAAATGCCAAA
CGCACCACGACAGGACTGGATTTTAACCGTGTTAGCCTTATTATGGCGGTGCTTGAAAAACGTTGTGGACTTTTATTGCA
AAATCAAGATGCTTATTTGAAATCGGCTGGTGGTGTTAAACTTGATGAGCCAGCGATTGATTTGGCAGTAGCGGTAGCCA
TTGCGTCAAGCTATAAAGAAAAGCCAACAAATCCACAGGAAGCCTTCATCGGTGAAATTGGTTTGACAGGCGAAATTCGT
CGTGTGACACGTATTGAGCAACGTATCAACGAAGCAGCAAAACTTGGTTTTACCAAAGTTTATGCTCCTAAAAACTCACT
GTCAGGTATTGATATTCCAGACAATATTCAAGTCATTGGTGTGACAACTGTGGGCGAAGTCCTCAAACAAGTTTTTGCGT
AA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)

AAA domain (AAA_25)

(69-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2G3NP60

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

88.3

100

0.883
  radA Streptococcus pneumoniae D39

88.3

100

0.883
  radA Streptococcus pneumoniae R6

88.3

100

0.883
  radA Streptococcus pneumoniae TIGR4

88.3

100

0.883
  radA Streptococcus mitis SK321

88.3

100

0.883
  radA Streptococcus mitis NCTC 12261

88.079

100

0.881
  radA Bacillus subtilis subsp. subtilis str. 168

62.031

100

0.62

Multiple sequence alignment