Detailed information NTG0164029

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: AU077_RS00155
• Genome accession: NZ_CP013688
• Coordinates: 33085..35526 (+)
• Length: 813 a.a.
• NCBI ID: WP_058621329.1
• Uniprot ID: -
• Organism: Streptococcus gallolyticus strain ICDDRB-NRC-S1
• Function: degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 28085..40526

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AU077_RS00130 (AU077_00130)	rpsB	29400..30167 (+)	768	WP_039671297.1	30S ribosomal protein S2	-
AU077_RS00135 (AU077_00135)	tsf	30278..31315 (+)	1038	WP_014295436.1	translation elongation factor Ts	-
AU077_RS00140 (AU077_00140)	-	31453..31917 (-)	465	WP_058621327.1	COG2426 family protein	-
AU077_RS11930	-	32221..32352 (-)	132	WP_257235488.1	hypothetical protein	-
AU077_RS00150 (AU077_00150)	-	32627..33088 (+)	462	WP_014295433.1	CtsR family transcriptional regulator	-
AU077_RS00155 (AU077_00155)	clpC	33085..35526 (+)	2442	WP_058621329.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
AU077_RS00160 (AU077_00160)	dusB	35600..36577 (-)	978	WP_058621330.1	tRNA dihydrouridine synthase DusB	-
AU077_RS00165 (AU077_00165)	hslO	36570..37436 (-)	867	WP_014295430.1	Hsp33 family molecular chaperone HslO	-
AU077_RS00170 (AU077_00170)	-	37550..38824 (-)	1275	WP_014295429.1	toxic anion resistance protein	-
AU077_RS00175 (AU077_00175)	-	38854..39681 (-)	828	WP_014295428.1	hypothetical protein	-

Sequence

Protein

• Length: 813 a.a.
• Molecular weight: 90244.58 Da
• Isoelectric Point: 5.7485

>NTDB_id=164029 AU077_RS00155 WP_058621329.1 33085..35526(+) (clpC) [Streptococcus gallolyticus strain ICDDRB-NRC-S1]
MSEYSIKMQEVFSVAQYQAARFESPYLESWHVLLAMVAIHDSVAGLTFAEYQTKIAYEEYEAAAVLAIGKSPLTDVDRVH
FVEQSKALSDVLAFAESICQVTGGNEIGTEHVLYAMLLNLDLFATRLLEVAGFKNKEDGDAARLIDLRKSLARNAGFTKE
NIKAIHELRKPKKSTMGGAFSEMLKPQSTAEDLSDFTRDLTEMARQGKLEPVIGREKEISRMVQVLSRKTKNNPVLVGEA
GVGKTALAYGLAQRIVNGAIPYELQDMRVLELDMMSVVAGTRFRGDFEERMNQIISDIEEDGHIILFIDEVHTIMGSGSG
IDSTLDAANILKPALARGTLHMVGATTQEEYQKHLEKDAALSRRFAKITIEEPSVEDAYQILLGLKKSYEDFHNVVISDE
AVLTAVKAAHRYLTSKNLPDSAIDLLDEASATVQGLVKKEAPATLTPADKAILEGDFKLATKLLKESRKKPNRKPTAVTE
DDIMATLSRLSGIPVEKMTQADSKKYLNLEKEFHKRVIGQDSAISAISRAIRRNQAGIRTGKRPIGSFMFLGPTGVGKTE
LAKALAELLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVGYEEGGELTEKVRNKPYSVLLFDEIEKAHPDIFNVLLQV
LDDGVLTDSRGRKVDFSNTIIIMTSNLGATALRDEKTVGFGARDMAHDYEAMQKRIMEELKKTYRPEFINRIDEKVVFHN
LTQENMRDVVKIMVKPLIATLAEKDITLKFQPSALKYLAEIGYDPEMGARPLRRTLQDKVEDELSELILSGELASGNTLK
IGVSKGKLKFDIA

Nucleotide

• Length: 2442 bp

>NTDB_id=164029 AU077_RS00155 WP_058621329.1 33085..35526(+) (clpC) [Streptococcus gallolyticus strain ICDDRB-NRC-S1]
ATGAGTGAGTATTCGATAAAAATGCAAGAGGTTTTCAGTGTTGCTCAATACCAAGCAGCGCGTTTTGAAAGCCCATATTT
AGAAAGTTGGCACGTCCTTTTAGCTATGGTTGCTATCCATGACTCAGTCGCAGGGCTAACATTTGCGGAATACCAAACTA
AAATTGCTTATGAAGAATATGAAGCGGCAGCTGTTTTAGCCATTGGGAAATCACCGTTAACGGATGTTGACAGAGTTCAC
TTTGTGGAACAATCTAAAGCTCTTAGTGATGTTTTAGCATTTGCTGAGTCTATTTGTCAGGTGACTGGTGGTAACGAAAT
CGGGACAGAACACGTGCTTTATGCGATGTTGTTAAACCTTGATTTATTTGCCACACGTTTGTTAGAGGTTGCTGGTTTTA
AAAACAAAGAAGACGGTGACGCTGCTCGTTTGATTGATTTGCGTAAGAGTTTGGCACGTAATGCTGGTTTTACAAAGGAA
AATATCAAAGCTATTCATGAACTTCGTAAGCCGAAAAAATCGACAATGGGCGGTGCTTTTTCTGAAATGCTGAAACCACA
GTCAACAGCGGAGGATTTGTCAGATTTCACGCGTGATTTGACAGAGATGGCACGTCAAGGAAAATTAGAACCTGTTATTG
GTCGTGAAAAAGAAATTTCTCGTATGGTGCAGGTGCTTAGCCGCAAAACGAAAAACAATCCAGTTTTAGTAGGGGAAGCT
GGTGTTGGTAAAACGGCTCTTGCTTACGGTTTGGCACAGCGAATTGTCAATGGTGCGATTCCGTATGAACTCCAAGACAT
GCGTGTTTTAGAGCTTGATATGATGAGCGTTGTGGCTGGTACGCGATTCCGTGGTGATTTTGAAGAACGCATGAACCAAA
TCATCTCAGATATTGAGGAAGACGGTCATATTATTCTTTTCATTGACGAAGTGCATACGATTATGGGTTCAGGCTCTGGA
ATTGACAGCACTTTGGATGCGGCTAATATTCTAAAACCAGCACTTGCGCGTGGTACGCTTCATATGGTTGGTGCGACAAC
GCAAGAAGAATATCAAAAACATCTTGAAAAAGATGCGGCGCTTTCTCGCCGTTTTGCTAAGATTACCATTGAAGAACCAA
GTGTTGAAGATGCTTACCAAATCTTGCTTGGACTAAAGAAATCATATGAAGATTTTCATAATGTGGTGATTTCTGATGAA
GCTGTTTTAACGGCTGTCAAAGCTGCGCATCGCTATTTGACAAGTAAAAATCTTCCTGATTCAGCGATTGATTTGCTTGA
TGAAGCAAGTGCAACGGTTCAAGGTTTGGTGAAAAAAGAAGCGCCAGCTACTTTGACACCTGCTGATAAAGCTATTTTGG
AAGGTGATTTCAAATTGGCAACGAAATTGCTGAAAGAGTCACGCAAGAAGCCAAATCGTAAACCAACTGCTGTGACAGAA
GATGATATTATGGCAACGCTCAGTCGTTTGTCAGGTATTCCTGTTGAGAAAATGACACAGGCAGATAGTAAGAAATACTT
GAACCTCGAAAAAGAATTCCATAAGCGTGTGATTGGCCAAGATTCAGCTATTTCAGCGATTAGTCGTGCTATTCGTCGTA
ATCAAGCGGGCATTCGTACAGGCAAACGTCCGATTGGCTCGTTTATGTTCTTGGGTCCGACGGGTGTTGGTAAAACAGAG
TTGGCTAAGGCACTAGCAGAATTGCTATTTGATGATGAATCTGCTCTTATCCGTTTTGATATGTCTGAGTACATGGAAAA
ATTTGCGGCGAGCCGTCTTAACGGAGCTCCTCCAGGGTATGTCGGTTATGAAGAAGGTGGCGAATTGACTGAAAAAGTTC
GCAACAAACCTTATTCTGTGCTTCTATTTGATGAAATTGAAAAAGCCCACCCAGATATTTTCAATGTGCTTCTCCAAGTG
TTGGATGACGGTGTGCTGACGGATAGTCGTGGTCGTAAAGTTGATTTTTCAAACACGATTATTATCATGACATCAAATCT
TGGGGCAACCGCTTTGCGTGATGAAAAGACAGTTGGTTTTGGTGCGCGTGATATGGCTCATGATTATGAGGCAATGCAAA
AACGCATCATGGAAGAACTCAAAAAAACTTACCGACCTGAATTCATCAACCGTATTGATGAAAAAGTTGTTTTCCACAAC
TTAACTCAAGAAAATATGCGTGATGTCGTGAAAATCATGGTTAAACCATTGATTGCGACACTAGCTGAAAAAGATATTAC
GCTAAAATTCCAACCATCAGCATTGAAATATTTAGCCGAAATTGGATACGACCCAGAAATGGGAGCTCGTCCGCTCCGCC
GTACTCTGCAAGATAAAGTTGAAGATGAATTATCAGAGCTTATTCTATCAGGCGAATTGGCAAGTGGAAATACCCTTAAA
ATCGGCGTTTCTAAAGGGAAACTCAAATTTGATATTGCTTAA

Domains

Predicted by InterproScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (543-714)

• ATPase family associated with various cellular activities (AAA) (AAA) (235-366)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (721-800)

• AAA lid domain (AAA_lid_9) (374-452)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (95-134)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Streptococcus mutans UA159	76.847	99.877	0.768
clpC	Streptococcus thermophilus LMG 18311	73.497	100	0.737
clpC	Streptococcus thermophilus LMD-9	73.374	100	0.736
clpC	Streptococcus pneumoniae Rx1	67.319	100	0.677
clpC	Streptococcus pneumoniae D39	67.319	100	0.677
clpC	Streptococcus pneumoniae TIGR4	67.365	99.877	0.673
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	49.341	100	0.507
clpC	Bacillus subtilis subsp. subtilis str. 168	43.494	100	0.444