Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   FORC43_RS25130 Genome accession   NZ_CP016828
Coordinates   4753092..4753568 (+) Length   158 a.a.
NCBI ID   WP_157787305.1    Uniprot ID   -
Organism   Escherichia coli strain FORC_043     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4748092..4758568
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC43_RS25100 (FORC43_4861) - 4748596..4749075 (-) 480 Protein_4620 IS3 family transposase -
  FORC43_RS25105 (FORC43_4862) ltrA 4749159..4750667 (-) 1509 WP_001189118.1 group II intron reverse transcriptase/maturase -
  FORC43_RS25115 - 4751340..4752079 (-) 740 Protein_4622 IS3 family transposase -
  FORC43_RS28850 - 4752136..4752261 (+) 126 Protein_4623 DUF945 domain-containing protein -
  FORC43_RS25125 - 4752603..4753076 (+) 474 WP_000855057.1 antirestriction protein -
  FORC43_RS25130 (FORC43_4866) radC 4753092..4753568 (+) 477 WP_157787305.1 RadC family protein Machinery gene
  FORC43_RS25135 (FORC43_4867) - 4753655..4753876 (+) 222 WP_000692352.1 DUF987 domain-containing protein -
  FORC43_RS25140 cbeA 4753956..4754333 (+) 378 WP_088888735.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  FORC43_RS25145 (FORC43_4869) - 4754380..4754757 (+) 378 WP_001094430.1 TA system toxin CbtA family protein -
  FORC43_RS25150 (FORC43_4870) - 4754754..4755242 (+) 489 WP_000761715.1 DUF5983 family protein -
  FORC43_RS25155 (FORC43_4871) - 4755262..4755459 (+) 198 WP_000772029.1 DUF957 domain-containing protein -
  FORC43_RS25160 (FORC43_4872) - 4755544..4756386 (+) 843 WP_001290187.1 DUF4942 domain-containing protein -
  FORC43_RS29615 - 4756716..4756875 (+) 160 Protein_4632 integrase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17805.53 Da        Isoelectric Point: 7.6152

>NTDB_id=163973 FORC43_RS25130 WP_157787305.1 4753092..4753568(+) (radC) [Escherichia coli strain FORC_043]
MQQLSFLPGEMTTRERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAVVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIIGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=163973 FORC43_RS25130 WP_157787305.1 4753092..4753568(+) (radC) [Escherichia coli strain FORC_043]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAAATGACAACCAGAGAGCGCAGCCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTTCATCCCCGGGAAGTGATTAAACGTGCCCTGTACCACAATGCCGCTGTCGTGGTGCTGGCGCA
CAATCACCCGTCAGGTGAAGTCACCCCCAGCAAGGCAGACCGCCTTATTACGGAACGTCTGGTACAGGCACTGGCCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAATCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

53.982

71.519

0.386