Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   FORC43_RS09710 Genome accession   NZ_CP016828
Coordinates   1908715..1909191 (-) Length   158 a.a.
NCBI ID   WP_001186773.1    Uniprot ID   -
Organism   Escherichia coli strain FORC_043     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1903715..1914191
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC43_RS09665 (FORC43_1874) sbmC 1904208..1904681 (+) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  FORC43_RS09670 (FORC43_1875) yeeA 1904879..1905937 (+) 1059 WP_001200905.1 FUSC family protein -
  FORC43_RS09675 (FORC43_1877) tmaR 1906109..1906438 (+) 330 WP_000450409.1 DUF496 family protein -
  FORC43_RS09680 (FORC43_1879) - 1906539..1906721 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  FORC43_RS29640 - 1906784..1906921 (+) 138 Protein_1782 transposase domain-containing protein -
  FORC43_RS28255 (FORC43_1880) - 1907210..1907302 (-) 93 Protein_1783 DUF957 domain-containing protein -
  FORC43_RS09690 (FORC43_1881) yeeW 1907336..1907530 (-) 195 WP_000988600.1 DUF5983 family protein -
  FORC43_RS09695 (FORC43_1882) cbtA 1907527..1907900 (-) 374 Protein_1785 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  FORC43_RS09700 (FORC43_1883) cbeA 1907989..1908357 (-) 369 WP_001285585.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  FORC43_RS09705 (FORC43_1884) yeeT 1908431..1908652 (-) 222 WP_000692323.1 DUF987 domain-containing protein -
  FORC43_RS09710 (FORC43_1885) radC 1908715..1909191 (-) 477 WP_001186773.1 JAB domain-containing protein Machinery gene
  FORC43_RS09715 (FORC43_1886) - 1909207..1909686 (-) 480 WP_000860076.1 antirestriction protein -
  FORC43_RS09720 (FORC43_1887) - 1909768..1910589 (-) 822 WP_001234530.1 DUF932 domain-containing protein -
  FORC43_RS09730 (FORC43_1889) - 1910810..1911220 (-) 411 WP_000846713.1 hypothetical protein -
  FORC43_RS09735 (FORC43_1890) - 1911236..1911919 (-) 684 WP_000775500.1 hypothetical protein -
  FORC43_RS09740 (FORC43_1891) - 1912055..1913125 (-) 1071 WP_000102643.1 patatin-like phospholipase family protein -
  FORC43_RS09745 (FORC43_1892) - 1913122..1914027 (-) 906 WP_000203545.1 diguanylate cyclase regulator RdcB family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17688.29 Da        Isoelectric Point: 7.2020

>NTDB_id=163944 FORC43_RS09710 WP_001186773.1 1908715..1909191(-) (radC) [Escherichia coli strain FORC_043]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=163944 FORC43_RS09710 WP_001186773.1 1908715..1909191(-) (radC) [Escherichia coli strain FORC_043]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTACTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392