Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   B624_RS08950 Genome accession   NZ_CP013673
Coordinates   2131228..2133099 (-) Length   623 a.a.
NCBI ID   WP_015512104.1    Uniprot ID   A0AB74HF70
Organism   Bifidobacterium longum strain 35624     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2126228..2138099
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B624_RS08935 (B624_1702) - 2126484..2127902 (-) 1419 WP_011068650.1 MFS transporter -
  B624_RS08940 (B624_1703) - 2127984..2129030 (+) 1047 WP_058101939.1 FAD:protein FMN transferase -
  B624_RS08945 (B624_1704) rcrQ 2129183..2131012 (-) 1830 WP_058101938.1 ABC transporter ATP-binding protein Regulator
  B624_RS08950 (B624_1705) rcrP 2131228..2133099 (-) 1872 WP_015512104.1 ABC transporter ATP-binding protein Regulator
  B624_RS08955 (B624_1706) - 2133286..2133807 (-) 522 WP_032684783.1 MarR family winged helix-turn-helix transcriptional regulator -
  B624_RS10450 - 2134144..2134488 (-) 345 WP_174768606.1 hypothetical protein -

Sequence

Protein


Download         Length: 623 a.a.        Molecular weight: 67968.52 Da        Isoelectric Point: 5.1914

>NTDB_id=163824 B624_RS08950 WP_015512104.1 2131228..2133099(-) (rcrP) [Bifidobacterium longum strain 35624]
MLRIMKYLSKAEIGQMLIALVTIVGQVYFDLKLPDYMSDITTLVETPGSHMKDIWIAGGKMLLISLGSAACAIITGYIAA
RVAASFTQRLRSLEFRKVESFGPAEMSKFSTASLITRSTNDVTQVQMFITMGLQLIVKSPIMAVWAVCKIAGEGFEWTLA
TGIAVVILLAAIVIMMAMVMPKFKAMQALTDNINLVARENLTGLRVVRAYNAEDYQEAKFTKANKDLTETQLFTNRVMAF
MMPLMNTVLNGLMLAVYWIGAYLIDAAGLKDKLTVFSNMVVFSNYSVQVIMSFLLMSMVFVLWPRADVSAQRIMEVLDTE
PIVENGTKTAADVAKTGQRGTVEFRNVSFTYPDSREAMLEGINFTAEQGQTVAFIGSTGSGKSSLINLVPRFYDTSQGQV
LVDGVDVRDYDLKALRDKIGYVPQQSVLFKGTVASNVSYGDQPGDPAEVEMADTSTPAGRKREAALIAAGEAVEGADIPA
EQLNRVRAAADVAQASEFVARMDGGYSAAIAQGGSNVSGGQKQRLSIARAVYRHPEILIFDDSFSALDFKTDREVRDALA
REAKDSTKLIVAQRIGTIMNADRIVVLDDGKVVGQGTHKELLDNCDVYRQIAESQLSQSELTA

Nucleotide


Download         Length: 1872 bp        

>NTDB_id=163824 B624_RS08950 WP_015512104.1 2131228..2133099(-) (rcrP) [Bifidobacterium longum strain 35624]
ATGCTTCGCATCATGAAATACCTCTCCAAAGCGGAGATCGGTCAGATGCTCATCGCTCTGGTGACCATCGTCGGGCAGGT
CTACTTCGACCTGAAACTGCCCGACTATATGTCAGACATCACCACGCTGGTCGAAACGCCGGGCAGCCACATGAAGGACA
TTTGGATTGCCGGCGGCAAGATGCTGCTCATCTCGCTCGGATCCGCGGCGTGTGCCATCATCACCGGCTACATCGCTGCG
CGCGTGGCGGCCTCGTTCACCCAGCGTCTGCGCTCGCTCGAATTCCGCAAGGTCGAGTCCTTCGGCCCGGCCGAAATGAG
CAAGTTCTCCACCGCCAGCCTCATCACCCGCTCCACCAACGACGTCACGCAGGTGCAGATGTTCATCACCATGGGCCTGC
AGCTCATCGTCAAGTCGCCGATCATGGCCGTATGGGCCGTGTGCAAGATCGCCGGCGAAGGCTTCGAATGGACGCTCGCC
ACCGGCATCGCCGTAGTGATTCTGCTGGCGGCCATCGTCATCATGATGGCCATGGTCATGCCGAAATTCAAGGCCATGCA
GGCCCTGACCGACAACATCAACCTCGTGGCCCGCGAGAACCTCACCGGCCTGCGCGTGGTGCGCGCCTACAATGCCGAGG
ACTACCAGGAAGCCAAATTCACCAAGGCCAACAAGGACCTCACCGAGACCCAGCTGTTCACCAACCGCGTCATGGCGTTC
ATGATGCCGTTGATGAACACCGTCCTGAACGGCCTGATGCTCGCCGTCTACTGGATCGGCGCTTACCTCATCGACGCCGC
CGGGCTCAAGGACAAGCTCACCGTGTTCTCCAACATGGTCGTGTTCTCCAACTACTCCGTGCAGGTCATCATGAGCTTCC
TGCTCATGAGCATGGTGTTCGTGCTCTGGCCGCGCGCCGACGTGTCCGCGCAGCGCATCATGGAGGTGCTCGACACTGAG
CCAATCGTCGAGAACGGCACCAAAACCGCCGCCGACGTGGCCAAAACCGGCCAGAGGGGCACCGTGGAATTCCGCAACGT
CAGCTTCACCTACCCGGATTCGCGCGAGGCGATGCTGGAAGGCATCAACTTCACCGCCGAGCAGGGCCAGACGGTGGCGT
TCATCGGCTCCACCGGCTCCGGCAAGTCGTCTCTTATCAATCTCGTGCCGCGCTTCTATGACACCAGCCAAGGCCAGGTG
TTGGTCGACGGCGTGGACGTGCGCGACTACGACCTGAAGGCCCTGCGCGACAAGATCGGCTACGTGCCGCAGCAGTCCGT
GCTGTTCAAGGGCACCGTGGCCTCCAACGTGAGCTACGGCGATCAGCCGGGCGACCCGGCGGAGGTCGAGATGGCCGATA
CCTCCACCCCGGCCGGGCGCAAGCGCGAGGCCGCGTTGATCGCCGCTGGCGAGGCCGTGGAAGGTGCCGATATACCGGCC
GAGCAGCTGAATCGCGTCAGGGCCGCCGCCGACGTGGCGCAGGCCAGCGAGTTCGTGGCGCGCATGGACGGCGGGTATTC
CGCCGCGATCGCCCAAGGCGGATCGAACGTGTCCGGCGGCCAGAAGCAGCGCCTGTCGATTGCGCGCGCGGTGTACCGTC
ACCCGGAAATCCTGATTTTCGACGACTCGTTCTCCGCGCTCGACTTCAAGACCGACCGCGAAGTGCGCGACGCGCTCGCC
CGCGAGGCCAAGGATTCCACCAAGCTCATCGTGGCCCAGCGCATCGGCACCATCATGAACGCCGACCGCATCGTCGTGCT
CGACGACGGCAAGGTCGTGGGTCAGGGCACGCACAAGGAACTGCTCGACAACTGCGACGTATACCGCCAGATCGCCGAAT
CCCAGCTCAGCCAGTCGGAGCTTACGGCGTAG

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(60-292)

ABC transporter (ABC_tran)

(359-543)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

48.899

100

0.499

Multiple sequence alignment