Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   B624_RS08945 Genome accession   NZ_CP013673
Coordinates   2129183..2131012 (-) Length   609 a.a.
NCBI ID   WP_058101938.1    Uniprot ID   -
Organism   Bifidobacterium longum strain 35624     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2124183..2136012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B624_RS10685 (B624_1700) - 2124490..2124867 (+) 378 WP_012472100.1 hypothetical protein -
  B624_RS08925 (B624_1701) rsmI 2124894..2125904 (-) 1011 WP_008783206.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  B624_RS08935 (B624_1702) - 2126484..2127902 (-) 1419 WP_011068650.1 MFS transporter -
  B624_RS08940 (B624_1703) - 2127984..2129030 (+) 1047 WP_058101939.1 FAD:protein FMN transferase -
  B624_RS08945 (B624_1704) rcrQ 2129183..2131012 (-) 1830 WP_058101938.1 ABC transporter ATP-binding protein Regulator
  B624_RS08950 (B624_1705) rcrP 2131228..2133099 (-) 1872 WP_015512104.1 ABC transporter ATP-binding protein Regulator
  B624_RS08955 (B624_1706) - 2133286..2133807 (-) 522 WP_032684783.1 MarR family winged helix-turn-helix transcriptional regulator -
  B624_RS10450 - 2134144..2134488 (-) 345 WP_174768606.1 hypothetical protein -

Sequence

Protein


Download         Length: 609 a.a.        Molecular weight: 66607.87 Da        Isoelectric Point: 5.8185

>NTDB_id=163823 B624_RS08945 WP_058101938.1 2129183..2131012(-) (rcrQ) [Bifidobacterium longum strain 35624]
MPRGPMGGRRAVEEPHDFGKVMGKLVNYCRNYLPVIIIALILGAAGTVCQIVGPDKLKDMTNEIVKGLPAIVNGRPVMNS
VDFGTVGHIAWTLVALYVGYAVLGYVQSWMMANVTQRTAQRLRESISVKINKLPLKYFDKVSYGDVLSRITNDVDAIGQT
LGQSLGSLITSVTLFVGALVMMFYNNVIMTLCAIGASLIGLIIMMAIMKSSQKYFARQQMALGDVNGHVEEMYAGHLIVK
AYNGEADSIRRFEKYNSDLYESGWKSQFLSGLMMPLMNFVGNFGYVVVCVVGAALALDGQIEFGVIVAFMMYVRLFTQPL
AQFAQAFQNLQRCAAAAERVFGFLEEPEMEDESGKSALLGTNGHEVKGDVEFSHVQFGYEPGKPIINDFSASVSAGQKVA
IVGPTGAGKTTMVNLLMRFYEISGGSISIDGVDTKSVPRWNVHDQFSMVLQDTWVFRGTVRENVAYSKPGVTNKQIEDAC
KAVGLDHFIRSLPDGYDTVLDDKSSLSQGQKQLLTIARAMVQDAPILILDEATSSVDTRTEELIQKAMDALTVGRTSFVI
AHRLSTIRDADMILVMNHGDVIERGTHDELLAAGGFYADLYNSQFALAD

Nucleotide


Download         Length: 1830 bp        

>NTDB_id=163823 B624_RS08945 WP_058101938.1 2129183..2131012(-) (rcrQ) [Bifidobacterium longum strain 35624]
ATGCCAAGAGGACCAATGGGCGGCAGGCGTGCCGTCGAAGAGCCCCATGATTTCGGCAAAGTCATGGGCAAGCTCGTGAA
CTATTGCCGCAACTATCTTCCCGTCATCATCATCGCGCTCATCCTGGGCGCGGCCGGCACCGTCTGCCAGATCGTCGGCC
CGGACAAGCTCAAGGACATGACCAACGAGATCGTCAAAGGTCTGCCCGCCATCGTTAACGGCAGACCGGTGATGAACTCG
GTAGATTTCGGCACGGTGGGCCACATCGCCTGGACTTTGGTGGCCCTGTACGTGGGCTACGCCGTGCTCGGCTACGTGCA
AAGCTGGATGATGGCCAACGTCACCCAGCGCACCGCCCAGCGACTGCGCGAATCGATCTCGGTCAAAATCAACAAACTGC
CGCTCAAATACTTCGACAAGGTCAGCTACGGCGACGTGCTGTCCCGCATCACCAACGATGTGGACGCCATCGGCCAGACG
CTGGGGCAGTCGCTCGGCTCGCTGATTACCTCGGTGACGCTGTTCGTGGGCGCGCTGGTGATGATGTTCTACAACAACGT
GATCATGACCCTGTGCGCCATCGGTGCCAGCCTCATCGGCCTGATCATCATGATGGCCATCATGAAGTCCTCCCAGAAGT
ACTTCGCCCGGCAGCAGATGGCGCTAGGTGACGTCAACGGCCACGTGGAGGAGATGTACGCCGGTCACCTCATCGTCAAG
GCATACAACGGCGAGGCCGATTCGATTCGTCGCTTCGAGAAGTACAACTCGGACCTCTACGAGTCCGGCTGGAAGTCGCA
GTTCCTCTCCGGCCTGATGATGCCGCTCATGAATTTCGTGGGCAACTTCGGCTACGTGGTGGTGTGCGTGGTGGGCGCGG
CGCTCGCGCTCGACGGGCAGATCGAGTTCGGCGTGATCGTGGCGTTCATGATGTATGTCCGCCTGTTCACCCAGCCGTTG
GCGCAGTTCGCCCAGGCCTTCCAGAACCTGCAGCGTTGCGCGGCGGCCGCCGAACGCGTGTTCGGCTTCCTTGAGGAGCC
GGAGATGGAGGACGAATCCGGCAAGTCCGCTTTGCTTGGGACCAACGGCCACGAAGTGAAGGGCGACGTGGAATTCAGCC
ACGTGCAGTTCGGCTACGAGCCGGGCAAGCCGATTATCAACGACTTCTCCGCTTCAGTCTCGGCCGGTCAGAAGGTCGCC
ATCGTCGGCCCGACCGGTGCCGGCAAGACCACCATGGTCAACCTGCTGATGCGCTTCTATGAGATTTCCGGCGGTTCGAT
TTCGATTGACGGCGTGGACACCAAGTCCGTGCCGCGCTGGAACGTGCACGACCAGTTCTCCATGGTGTTGCAGGATACGT
GGGTGTTCCGCGGCACTGTGCGCGAGAACGTCGCTTACTCCAAGCCTGGCGTGACCAACAAGCAAATCGAGGATGCGTGC
AAGGCCGTGGGCCTCGACCACTTCATCCGCTCACTGCCGGACGGCTATGACACCGTGCTCGATGACAAGTCGTCGCTCTC
CCAGGGCCAGAAGCAGCTGCTGACCATCGCCCGCGCGATGGTGCAGGACGCGCCGATTCTGATTCTCGACGAGGCCACCT
CCTCGGTCGATACCCGCACCGAAGAGCTGATTCAGAAGGCCATGGATGCGCTGACCGTGGGGCGTACGAGCTTTGTGATC
GCGCATCGCCTCTCCACGATTCGCGACGCCGACATGATCCTCGTCATGAACCACGGCGACGTGATCGAGCGCGGCACGCA
CGACGAACTGCTGGCGGCGGGCGGTTTTTACGCCGACCTCTACAACAGCCAGTTCGCGCTCGCTGACTGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(37-320)

ABC transporter (ABC_tran)

(387-534)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

54.188

96.059

0.521

Multiple sequence alignment