Detailed information    

insolico Bioinformatically predicted

Overview


Name   kpsS   Type   Regulator
Locus tag   QP84_RS04610 Genome accession   NZ_CP016684
Coordinates   914619..915878 (+) Length   419 a.a.
NCBI ID   WP_002247923.1    Uniprot ID   -
Organism   Neisseria meningitidis strain L91543     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context


Location: 909619..920878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QP84_RS04590 (QP84_004590) rfbB 909755..910822 (+) 1068 WP_002231450.1 dTDP-glucose 4,6-dehydratase -
  QP84_RS04595 (QP84_004595) rfbA 910885..911751 (+) 867 WP_002224369.1 glucose-1-phosphate thymidylyltransferase RfbA -
  QP84_RS04600 (QP84_004600) rfbC 911805..912344 (+) 540 WP_002247921.1 dTDP-4-dehydrorhamnose 3,5-epimerase -
  QP84_RS04605 (QP84_004605) - 912368..914482 (+) 2115 WP_002247922.1 capsular polysaccharide biosynthesis protein -
  QP84_RS04610 (QP84_004610) kpsS 914619..915878 (+) 1260 WP_002247923.1 capsule biosynthesis protein Regulator
  QP84_RS04615 (QP84_004615) - 916247..917653 (+) 1407 WP_002226901.1 tetratricopeptide repeat protein -
  QP84_RS04620 (QP84_004620) gltS 917871..919085 (+) 1215 WP_002224378.1 sodium/glutamate symporter -
  QP84_RS04625 (QP84_004625) - 919184..920200 (+) 1017 WP_002216199.1 lysozyme inhibitor LprI family protein -
  QP84_RS04630 (QP84_004630) - 920211..920408 (+) 198 WP_002215316.1 hypothetical protein -
  QP84_RS13435 (QP84_004635) - 920426..920575 (+) 150 WP_019742709.1 hypothetical protein -

Sequence


Protein


Download         Length: 419 a.a.        Molecular weight: 48694.51 Da        Isoelectric Point: 8.6667

>NTDB_id=163793 QP84_RS04610 WP_002247923.1 914619..915878(+) (kpsS) [Neisseria meningitidis strain L91543]
MKQTVLKNNLQNLLESAENILLLQGPVGDFFLRLADWLTANGKTVHKFNFNAGDDYFYPPTQAHTVVFNDNYDAFPEFLQ
EYITQHHIQAVVCFGDTRPYHVIAKRIANENQASFWAFEEGYFRPYYITLEKDGVNAFSPLPRRADFFLEQFPKLAQQEY
KAPTPVRGGFTPMAKNAIRYYIELFRNLRKYPDYIHHRAPNAGHYLKPWSLSILKRLNYYIEDIQIAKRVEAGKYGKFFI
VPLQVFNDSQVHIHCDFPSVRSFLLHVLSSFAEHAPADTNIIIKHHPMDRGFIDYWRDIKRFIKEHPELKGRVIYVHDVP
LPVFLRHGLGMVTINSTSGLSGLIHNMPVKVLGRAYYDIPGITDQNTLAEFWNHPTPPDKELFHAYRMYHLNVTQINGNF
YSQVFFPNKNTSDSSTPTT

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=163793 QP84_RS04610 WP_002247923.1 914619..915878(+) (kpsS) [Neisseria meningitidis strain L91543]
ATGAAACAGACCGTCCTCAAAAATAACCTGCAAAACCTGCTTGAAAGCGCAGAAAATATCCTGCTGCTTCAAGGCCCTGT
CGGCGATTTTTTTCTGCGCCTTGCCGACTGGCTGACTGCAAACGGCAAAACCGTACATAAATTCAACTTTAATGCAGGAG
ACGACTATTTTTATCCGCCCACTCAAGCGCATACCGTTGTTTTTAACGACAACTACGATGCCTTTCCTGAGTTTTTGCAA
GAATACATCACTCAACATCACATCCAGGCCGTTGTCTGCTTTGGCGACACACGCCCTTATCACGTCATTGCAAAACGCAT
TGCAAACGAAAACCAAGCCAGTTTCTGGGCGTTTGAAGAAGGCTATTTCCGCCCCTACTACATCACCTTAGAAAAAGACG
GCGTCAACGCATTTTCCCCGTTGCCACGCCGTGCCGACTTTTTTCTTGAACAATTCCCTAAGCTTGCCCAGCAAGAATAT
AAAGCGCCAACGCCGGTACGCGGCGGATTTACGCCCATGGCAAAAAACGCCATCCGTTACTATATCGAGTTGTTCCGCAA
TCTACGCAAATACCCCGACTACATCCACCACCGCGCACCCAATGCCGGCCATTACCTCAAACCGTGGTCGCTCTCCATCC
TCAAGCGTTTGAACTACTATATTGAAGACATCCAAATCGCCAAACGTGTGGAAGCAGGCAAATACGGCAAGTTTTTTATT
GTTCCCTTGCAGGTATTCAACGACAGCCAAGTCCATATCCATTGCGACTTTCCCAGCGTCCGCAGCTTCCTGCTCCATGT
TTTGAGTTCATTTGCCGAGCACGCGCCTGCCGATACCAACATCATCATCAAGCATCATCCTATGGACCGCGGCTTTATCG
ACTACTGGCGCGACATTAAACGCTTTATCAAAGAACACCCCGAACTCAAAGGCCGTGTGATTTATGTCCATGATGTCCCC
CTGCCCGTTTTCCTGCGCCACGGTCTCGGCATGGTTACCATCAACAGCACCAGCGGCCTGTCCGGACTGATTCACAATAT
GCCAGTTAAGGTTCTCGGCCGTGCCTATTATGATATTCCCGGCATTACTGACCAAAATACCTTGGCAGAATTTTGGAATC
ATCCGACACCGCCTGACAAAGAGCTGTTCCATGCCTACCGAATGTACCACCTCAACGTGACCCAAATTAACGGCAACTTC
TACAGTCAGGTCTTTTTTCCTAACAAAAACACATCCGACTCTTCCACACCAACAACCTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

38.579

94.033

0.363


Multiple sequence alignment