Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   AUQ45_RS00720 Genome accession   NZ_CP013672
Coordinates   112402..112797 (+) Length   131 a.a.
NCBI ID   WP_002987809.1    Uniprot ID   Q1JNV8
Organism   Streptococcus pyogenes strain AP53     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 107402..117797
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AUQ45_RS00690 (AUQ45_0092) - 108268..108576 (+) 309 WP_011017251.1 hypothetical protein -
  AUQ45_RS00695 (AUQ45_0093) proC 108659..109429 (-) 771 WP_002986527.1 pyrroline-5-carboxylate reductase -
  AUQ45_RS00700 (AUQ45_0094) pepA 109477..110544 (-) 1068 WP_014635229.1 glutamyl aminopeptidase -
  AUQ45_RS00705 (AUQ45_0095) - 111009..111293 (+) 285 WP_014635230.1 DUF4651 domain-containing protein -
  AUQ45_RS00710 (AUQ45_0096) - 111290..111607 (+) 318 WP_014635231.1 thioredoxin family protein -
  AUQ45_RS00715 (AUQ45_0097) ytpR 111625..112251 (+) 627 WP_002986511.1 YtpR family tRNA-binding protein -
  AUQ45_RS00720 (AUQ45_0098) ssbA 112402..112797 (+) 396 WP_002987809.1 single-stranded DNA-binding protein Machinery gene
  AUQ45_RS00725 (AUQ45_0099) - 113057..113698 (-) 642 WP_014635233.1 deoxynucleoside kinase -
  AUQ45_RS00730 (AUQ45_0100) dusB 113718..114695 (-) 978 WP_002986502.1 tRNA dihydrouridine synthase DusB -
  AUQ45_RS00735 (AUQ45_0101) hslO 114682..115554 (-) 873 WP_002994071.1 Hsp33 family molecular chaperone HslO -
  AUQ45_RS00740 (AUQ45_0102) nra 115680..117215 (-) 1536 WP_014635234.1 transcriptional regulator Nra -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14769.92 Da        Isoelectric Point: 8.0157

>NTDB_id=163770 AUQ45_RS00720 WP_002987809.1 112402..112797(+) (ssbA) [Streptococcus pyogenes strain AP53]
MYNKVIAIGRLVAKPELVKTATDKHVARLSLAVNRRFKNASGEREADFISVVVWGKLAETLVSYASKGSLISIDGELRTR
KYDKDGQVHYVTEVLCQSFQLLESRAQRAMRENNVTNDLVDLVLEEDTLPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=163770 AUQ45_RS00720 WP_002987809.1 112402..112797(+) (ssbA) [Streptococcus pyogenes strain AP53]
ATGTATAATAAAGTGATAGCAATCGGTCGTTTGGTAGCTAAACCAGAATTGGTAAAAACAGCTACGGATAAGCATGTAGC
ACGTCTCTCTTTAGCTGTTAATCGAAGATTTAAAAATGCTTCTGGAGAGCGAGAAGCTGATTTTATTTCAGTTGTTGTTT
GGGGAAAGTTAGCTGAAACCTTGGTTTCTTATGCTAGCAAAGGTAGTTTGATATCTATTGATGGCGAACTTAGGACCCGC
AAGTATGATAAAGATGGGCAAGTGCATTATGTGACAGAAGTTCTCTGCCAATCATTTCAACTGCTTGAAAGTCGTGCTCA
GCGCGCTATGAGAGAAAATAATGTTACTAATGATCTAGTTGATTTAGTCTTAGAAGAAGATACTCTTCCCTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q1JNV8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

74.809

100

0.748
  ssbB Streptococcus sobrinus strain NIDR 6715-7

72.519

100

0.725
  ssbB/cilA Streptococcus pneumoniae Rx1

70.992

100

0.71
  ssbB/cilA Streptococcus pneumoniae D39

70.992

100

0.71
  ssbB/cilA Streptococcus pneumoniae R6

70.992

100

0.71
  ssbB/cilA Streptococcus mitis NCTC 12261

70.992

100

0.71
  ssbB/cilA Streptococcus pneumoniae TIGR4

70.992

100

0.71
  ssbB/cilA Streptococcus mitis SK321

70.229

100

0.702
  ssbB Lactococcus lactis subsp. cremoris KW2

63.158

87.023

0.55
  ssb Latilactobacillus sakei subsp. sakei 23K

46.903

86.26

0.405
  ssbA Bacillus subtilis subsp. subtilis str. 168

49.057

80.916

0.397

Multiple sequence alignment