Detailed information NTG0163756

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: ATY42_RS08125
• Genome accession: NZ_CP013670
• Coordinates: 1691618..1693009 (-)
• Length: 463 a.a.
• NCBI ID: WP_011258418.1
• Uniprot ID: A0A854CLX6
• Organism: Xanthomonas oryzae pv. oryzae strain PXO71
• Function: homologous recombination (predicted from homology) Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IScluster/Tn	1689417..1694195	1691618..1693009	within	0

Gene organization within MGE regions

Location: 1689417..1694195

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ATY42_RS08110 (ATY42_07860)	-	1689417..1690458 (-)	1042	Protein_1543	IS3 family transposase	-
ATY42_RS08120 (ATY42_07870)	-	1690588..1691237 (+)	650	Protein_1544	IS701-like element ISXo15 family transposase	-
ATY42_RS08125 (ATY42_07875)	radA	1691618..1693009 (-)	1392	WP_011258418.1	DNA repair protein RadA	Machinery gene
ATY42_RS08130 (ATY42_07880)	-	1693094..1694135 (-)	1042	Protein_1546	IS3 family transposase	-

Sequence

Protein

• Length: 463 a.a.
• Molecular weight: 48847.13 Da
• Isoelectric Point: 7.3924

>NTDB_id=163756 ATY42_RS08125 WP_011258418.1 1691618..1693009(-) (radA) [Xanthomonas oryzae pv. oryzae strain PXO71]
MAKAKTAYVCGECGAEYTKWQGQCTECGVWNTLSEIVLESATPGGKASPATSRRIGWAGKAEAPKITALKDVQQSEQARV
STGIGEFDRVLGGGLVEGAVVLIGGDPGIGKSTLLLQALASMASTLPVLYVTGEESLAQVAGRAVRLDLPLDGLNALSET
GIEHILQHASVARPRLIVADSVQTLWTESLTAAPGSVSQVRESAARLVRYAKETGTAVFLVGHVTKEGGIAGPRVLEHMV
DAVLYFEGESGSRFRLLRAFKNRFGAVNELGVFAMGEKGLKEVSNPSAIFLSGGSTQQPGSCVMVTREGTRPLMVEVQAL
VDASPLSNPRRVAVGLEQNRLAMLLAVLHRHGGIVVGDQDVFVNVVGGIRVQETAADLPVLLAVLSSLRDRPLAEKTIAF
GEVGLSGEIRPVPNGEDRLKEAATHGFKRAIVPRANAPKTTSIKGMEIIAVERLRQALEVAAD

Nucleotide

• Length: 1392 bp

>NTDB_id=163756 ATY42_RS08125 WP_011258418.1 1691618..1693009(-) (radA) [Xanthomonas oryzae pv. oryzae strain PXO71]
ATGGCGAAGGCGAAGACGGCCTACGTGTGCGGGGAGTGCGGTGCCGAGTACACAAAGTGGCAGGGGCAGTGCACCGAGTG
CGGTGTCTGGAACACGCTGAGCGAAATTGTGCTCGAAAGCGCAACGCCGGGCGGCAAGGCCTCGCCTGCGACCTCGCGGC
GTATCGGTTGGGCCGGCAAGGCCGAGGCGCCCAAGATCACTGCGCTCAAGGACGTGCAGCAGTCCGAGCAGGCGCGCGTG
TCCACCGGCATCGGCGAGTTCGACCGGGTGTTGGGCGGCGGGTTGGTCGAGGGGGCGGTGGTGCTGATCGGCGGCGACCC
GGGCATCGGCAAATCGACGCTGCTGCTGCAGGCGCTGGCGAGCATGGCCTCTACGTTGCCGGTGTTGTACGTCACCGGCG
AAGAATCGCTGGCCCAGGTAGCAGGGCGCGCGGTGCGCCTGGATCTGCCGCTGGACGGCCTGAACGCCCTGTCCGAAACC
GGTATCGAACACATCCTGCAGCACGCCAGCGTGGCGCGGCCGAGGCTGATCGTGGCCGATTCGGTGCAGACCTTGTGGAC
CGAATCGCTTACCGCAGCGCCAGGCTCGGTGAGCCAGGTGCGCGAGAGCGCAGCGCGGCTGGTGCGCTACGCCAAGGAAA
CCGGCACCGCCGTGTTTCTGGTCGGCCATGTGACCAAGGAAGGCGGTATCGCCGGGCCACGCGTGCTTGAGCACATGGTC
GATGCGGTGCTGTATTTCGAAGGCGAAAGTGGCAGCCGATTCCGCCTGTTGCGCGCGTTCAAGAACCGCTTCGGTGCGGT
CAACGAGCTAGGCGTCTTCGCGATGGGCGAGAAGGGCCTCAAGGAAGTCTCCAACCCATCGGCAATCTTCCTGTCCGGTG
GCAGCACTCAGCAACCGGGCAGTTGCGTGATGGTCACCCGCGAAGGCACCCGCCCCCTGATGGTGGAGGTGCAGGCCTTG
GTGGATGCCTCGCCGTTGTCCAATCCGCGCCGCGTTGCGGTGGGGCTGGAGCAGAACCGGCTGGCGATGTTGCTGGCGGT
CCTGCACCGCCATGGCGGCATCGTGGTCGGCGATCAGGACGTGTTCGTCAATGTGGTGGGTGGCATCCGCGTGCAGGAAA
CGGCGGCCGATCTGCCCGTGCTGCTGGCGGTGCTGTCGTCGCTGCGCGACCGGCCGTTGGCCGAAAAGACCATCGCGTTC
GGCGAAGTGGGACTGTCCGGCGAAATCCGCCCGGTGCCCAACGGCGAGGACCGCCTGAAGGAAGCGGCGACGCATGGCTT
CAAGCGCGCCATTGTGCCCCGCGCCAATGCGCCCAAGACGACCAGCATCAAGGGAATGGAAATTATCGCAGTGGAGCGCT
TGAGACAGGCGCTGGAGGTGGCGGCAGACTGA

Domains

Predicted by InterproScan.

• AAA domain (AAA_25) (90-228)

• Subunit ChlI of Mg-chelatase (ChlI) (352-436)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

3D structure

• AlphaFold DB: A0A854CLX6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	48.38	100	0.484
radA	Streptococcus mitis NCTC 12261	42.484	99.136	0.421
radA	Streptococcus pneumoniae Rx1	42.484	99.136	0.421
radA	Streptococcus pneumoniae D39	42.484	99.136	0.421
radA	Streptococcus pneumoniae R6	42.484	99.136	0.421
radA	Streptococcus pneumoniae TIGR4	42.484	99.136	0.421
radA	Streptococcus mitis SK321	42.266	99.136	0.419