Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   A6L31_RS09750 Genome accession   NZ_CP016683
Coordinates   1860353..1862332 (-) Length   659 a.a.
NCBI ID   WP_002220630.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M22191     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1855353..1867332
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6L31_RS09730 (A6L31_09730) - 1855394..1856776 (+) 1383 WP_002240632.1 MFS transporter -
  A6L31_RS09735 (A6L31_09735) ssb 1856780..1857304 (+) 525 WP_002212976.1 single-stranded DNA-binding protein Machinery gene
  A6L31_RS09740 (A6L31_09740) - 1857829..1858752 (+) 924 WP_002240631.1 DMT family transporter -
  A6L31_RS09745 (A6L31_09745) fumC 1858817..1860205 (-) 1389 WP_002219054.1 class II fumarate hydratase -
  A6L31_RS09750 (A6L31_09750) recP/tkt 1860353..1862332 (-) 1980 WP_002220630.1 transketolase Machinery gene
  A6L31_RS09765 (A6L31_09765) ccoG 1862860..1864356 (+) 1497 WP_002219062.1 cytochrome c oxidase accessory protein CcoG -
  A6L31_RS09770 (A6L31_09770) - 1864359..1864907 (+) 549 WP_002212991.1 FixH family protein -
  A6L31_RS09775 (A6L31_09775) - 1865118..1866293 (-) 1176 WP_002216908.1 NAD(P)H-dependent flavin oxidoreductase -

Sequence

Protein


Download         Length: 659 a.a.        Molecular weight: 71700.17 Da        Isoelectric Point: 5.6980

>NTDB_id=163752 A6L31_RS09750 WP_002220630.1 1860353..1862332(-) (recP/tkt) [Neisseria meningitidis strain M22191]
MSQLANAIRFLSADAVQKANSGHPGAPMGMAEMAETLWTKFLNHNPANPKFYNRDRFVLSNGHASMLLYSLLHLTGYNLS
IEDLKNFRQLHSKTPGHPEYGYTDGVETTTGPLGQGIANAVGMALAEKILAAEFNKDGLNIVDHYTYVFMGDGCLMEGVS
HEACSLAGTLGLGKLIVLYDDNNISIDGKVDGWFTENIPQRFESYGWHVVPNVNGHDTAAIQAAIEAARAETGKPSIICC
KTLIGKGSANKEGSHKTHGAPLGADEIEATRKHLGWTYPAFEIPQEIYDAWNAKEKGAKLEAEWDKLFAQYQAKYPAEAA
EFVRRMDKKLPENFDGYVQTALKEVCAKAETVATRKASQNSIEILAKELPELVGGSADLTPSNLTDWSNSVSVTRDKGGN
YIHYGVREFGMGAIINGLVLHGGVKPFGATFLMFSEYERNALRMAALMKINPVFVFTHDSIGLGEDGPTHQPIEQTATLR
LIPNMDVWRPCDTAESLVAWAEAVKAADHPSCLIFSRQNLKFQARSEQQLNDIKRGGYVISEAQGNAQAVIIATGSEVEL
ALEAQKALAAQNIAVRVVSMPSTNVFDRQDTAYQAAVLPEGLPRIAVEAGHADGWYKYVGLNGAVVGINRFGESAPADLL
FKEFGFTVDNVVDTVKSVL

Nucleotide


Download         Length: 1980 bp        

>NTDB_id=163752 A6L31_RS09750 WP_002220630.1 1860353..1862332(-) (recP/tkt) [Neisseria meningitidis strain M22191]
ATGTCTCAACTGGCAAACGCAATCCGCTTCCTCTCGGCCGATGCCGTTCAAAAAGCCAATTCCGGCCACCCCGGCGCGCC
TATGGGTATGGCGGAAATGGCGGAAACATTGTGGACGAAATTCCTCAATCACAACCCCGCCAACCCCAAATTCTACAACC
GCGACCGCTTCGTCCTCTCCAACGGCCACGCGTCTATGCTGTTGTACAGCCTGCTGCACCTGACCGGCTACAACCTAAGC
ATTGAAGACTTGAAAAACTTCCGCCAACTGCACAGCAAAACCCCCGGCCATCCCGAATACGGCTACACCGACGGCGTGGA
AACCACGACCGGCCCGTTGGGGCAAGGGATTGCCAACGCGGTGGGTATGGCATTGGCAGAAAAAATCCTTGCCGCCGAAT
TTAATAAAGACGGTTTGAACATCGTCGATCATTACACCTACGTCTTTATGGGCGACGGCTGTCTGATGGAAGGCGTATCG
CACGAAGCCTGTTCGCTCGCCGGCACCTTGGGCTTGGGCAAACTGATTGTTTTATATGATGACAACAATATTTCCATTGA
TGGTAAAGTGGACGGCTGGTTTACCGAAAACATCCCGCAACGCTTTGAAAGCTACGGCTGGCACGTCGTTCCTAACGTAA
ATGGTCATGACACCGCCGCCATTCAAGCCGCCATCGAAGCCGCACGTGCCGAAACCGGCAAACCGTCCATCATCTGCTGT
AAAACCTTAATCGGCAAAGGCAGTGCCAATAAAGAAGGCAGCCACAAAACCCACGGCGCACCTTTGGGTGCGGACGAAAT
CGAAGCCACGCGCAAACATTTGGGCTGGACTTACCCTGCCTTTGAAATCCCGCAAGAAATTTACGATGCGTGGAATGCCA
AAGAAAAAGGCGCGAAACTGGAAGCCGAATGGGACAAACTGTTCGCGCAATACCAAGCCAAATATCCTGCCGAAGCCGCA
GAATTTGTGCGCCGTATGGATAAAAAACTGCCGGAAAACTTTGACGGGTACGTTCAGACGGCATTGAAAGAAGTGTGCGC
CAAAGCCGAAACCGTCGCCACCCGCAAAGCCAGCCAAAACAGCATCGAAATCTTGGCAAAAGAGCTGCCCGAACTGGTGG
GCGGCTCTGCCGACCTGACCCCGTCCAATCTGACCGACTGGTCAAACAGCGTCTCCGTTACCCGCGACAAAGGCGGCAAC
TACATCCACTACGGCGTGCGCGAGTTCGGCATGGGTGCGATTATAAACGGCTTGGTATTGCACGGCGGCGTGAAACCCTT
TGGCGCGACCTTCCTGATGTTCAGCGAATACGAGCGCAACGCCCTGCGTATGGCGGCACTGATGAAAATCAACCCCGTGT
TCGTGTTCACCCACGATTCCATCGGTTTGGGCGAAGACGGCCCAACCCACCAGCCGATTGAGCAAACCGCCACCCTGCGC
CTGATTCCGAATATGGACGTATGGCGGCCGTGCGACACCGCCGAATCCTTGGTCGCTTGGGCAGAAGCCGTCAAAGCCGC
CGATCACCCGTCCTGCCTGATTTTCAGCCGTCAAAACCTGAAATTCCAAGCGCGCAGCGAACAACAACTGAACGACATCA
AACGCGGCGGCTACGTCATCAGCGAAGCCCAAGGCAACGCCCAAGCCGTCATCATTGCCACCGGTTCCGAAGTCGAGCTG
GCTTTGGAAGCGCAAAAAGCACTCGCCGCGCAAAACATCGCCGTGCGCGTCGTTTCCATGCCGTCCACCAACGTATTCGA
CCGCCAAGACACCGCCTATCAAGCCGCCGTCCTGCCCGAAGGCCTGCCGCGCATTGCCGTAGAAGCCGGACACGCCGACG
GCTGGTACAAATACGTCGGCCTGAACGGCGCAGTCGTCGGCATCAACCGCTTCGGCGAATCCGCCCCTGCCGATCTGCTG
TTCAAAGAATTCGGCTTTACCGTGGACAATGTGGTCGATACAGTGAAATCAGTGCTGTAA

Domains

Predicted by InterProScan.

Transketolase, pyrimidine binding domain (Transket_pyr)

(351-521)

Transketolase, C-terminal domain (Transketolase_C)

(546-651)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(3-331)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

48.507

100

0.493

Multiple sequence alignment