Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AXO1947_RS04950 Genome accession   NZ_CP013666
Coordinates   1150489..1151748 (-) Length   419 a.a.
NCBI ID   WP_024743356.1    Uniprot ID   -
Organism   Xanthomonas oryzae pv. oryzae strain AXO1947     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1145489..1156748
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AXO1947_RS04925 (AXO1947_04925) - 1145826..1146215 (+) 390 WP_053514089.1 hypothetical protein -
  AXO1947_RS04930 (AXO1947_04930) - 1146293..1146970 (+) 678 WP_003490678.1 response regulator transcription factor -
  AXO1947_RS04935 (AXO1947_04935) - 1147439..1148773 (+) 1335 WP_033003293.1 HAMP domain-containing sensor histidine kinase -
  AXO1947_RS04940 (AXO1947_04940) coaE 1149000..1149605 (-) 606 WP_024743358.1 dephospho-CoA kinase -
  AXO1947_RS04945 (AXO1947_04945) - 1149619..1150482 (-) 864 WP_024743357.1 A24 family peptidase -
  AXO1947_RS04950 (AXO1947_04950) pilC 1150489..1151748 (-) 1260 WP_024743356.1 type II secretion system F family protein Machinery gene
  AXO1947_RS04955 (AXO1947_04955) pilA2 1152104..1152529 (+) 426 WP_053514082.1 pilin Machinery gene
  AXO1947_RS04960 (AXO1947_04960) - 1152664..1154253 (+) 1590 WP_053514081.1 phosphoethanolamine transferase -
  AXO1947_RS04965 (AXO1947_04965) - 1154324..1154905 (+) 582 WP_234372812.1 hypothetical protein -
  AXO1947_RS25160 (AXO1947_04970) - 1154875..1156400 (+) 1526 Protein_1015 hypothetical protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45994.46 Da        Isoelectric Point: 10.3290

>NTDB_id=163716 AXO1947_RS04950 WP_024743356.1 1150489..1151748(-) (pilC) [Xanthomonas oryzae pv. oryzae strain AXO1947]
MSVARSAIKKQPVDRNTSMLQTFVWEGADKRGVKMKGEQQARNANMLRAELRRQGIVPSMVKQKPKPLLGAAGKKITPKD
IAFFSRQMATMMKSGVPIVSSLEIIGEGHKNPRMKKMVGQIRTDIEGGSSLYESISKHPVQFDELYRNLVRAGEGAGVLE
TVLETVATYKENIEALKGKIKKAMFYPATVVAVAIIVSAILLIFVVPQFEQVFKSFGAELPAFTQLLVNASRFMVSYWWL
TLMVTVGSVVGFIFAYKRSPRMQHGLDRLILKVPVIGKIMHNSAIARFARTTAVTFKAGVPLVEALGIVAGATGNKLYEE
AVFRMRDDVSVGYPVNMAMKQVNLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEEEVNNAVDALSSLLEPLIMVFIGTIV
GGIVIGMYLPIFKLGAVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=163716 AXO1947_RS04950 WP_024743356.1 1150489..1151748(-) (pilC) [Xanthomonas oryzae pv. oryzae strain AXO1947]
ATGTCAGTCGCGCGTAGCGCCATCAAGAAGCAACCGGTCGACCGGAACACGAGCATGCTGCAGACCTTCGTTTGGGAAGG
GGCTGACAAGCGTGGCGTGAAGATGAAGGGGGAGCAGCAAGCCCGTAACGCCAATATGTTGCGGGCAGAACTGCGCCGTC
AGGGCATTGTGCCCAGCATGGTGAAGCAAAAGCCGAAGCCTCTGCTCGGAGCGGCGGGGAAGAAAATTACCCCTAAAGAC
ATTGCGTTCTTTAGCCGCCAGATGGCGACGATGATGAAGTCGGGCGTGCCCATCGTCAGTTCGTTGGAGATCATTGGCGA
GGGACACAAGAACCCACGCATGAAAAAAATGGTCGGCCAGATCAGGACAGATATCGAGGGTGGATCCTCGCTCTACGAGT
CCATCAGCAAACATCCCGTTCAGTTTGACGAGCTCTACCGCAACCTCGTCCGCGCGGGCGAAGGCGCTGGCGTACTGGAG
ACAGTCCTCGAAACGGTCGCTACCTACAAAGAAAACATTGAAGCCCTGAAGGGCAAGATCAAAAAGGCAATGTTCTACCC
TGCCACGGTGGTTGCGGTGGCAATCATCGTGAGTGCGATTTTGCTCATCTTCGTGGTGCCTCAGTTCGAGCAAGTATTCA
AGAGCTTCGGTGCCGAACTACCGGCATTCACTCAGCTCCTCGTCAACGCATCGCGCTTCATGGTCAGCTATTGGTGGTTG
ACGCTGATGGTGACAGTTGGATCTGTCGTTGGCTTCATCTTTGCCTACAAACGTTCTCCACGGATGCAGCATGGACTCGA
TCGATTGATCCTCAAGGTGCCCGTAATCGGGAAGATCATGCACAACAGTGCGATTGCACGCTTTGCACGGACCACTGCAG
TGACATTCAAGGCAGGCGTTCCTCTAGTTGAGGCACTTGGGATCGTAGCTGGCGCTACCGGCAATAAGCTTTATGAAGAG
GCTGTTTTCAGGATGCGGGACGATGTGTCCGTAGGTTACCCGGTCAACATGGCGATGAAACAGGTGAACCTATTTCCACA
CATGGTTATTCAAATGACTGCGATTGGCGAAGAAGCCGGCGCACTTGATGCAATGCTATTCAAAGTGGCTGAATACTTTG
AGGAGGAGGTCAATAATGCCGTGGATGCACTCAGCAGTCTGCTTGAACCACTGATCATGGTGTTCATTGGCACCATCGTC
GGCGGCATAGTCATCGGCATGTATCTTCCGATCTTCAAACTCGGCGCAGTGGTGGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

53.202

96.897

0.516
  pilC Pseudomonas stutzeri DSM 10701

53.535

94.511

0.506
  pilC Acinetobacter baylyi ADP1

50.864

96.659

0.492
  pilC Acinetobacter baumannii D1279779

50.864

96.659

0.492
  pilG Neisseria gonorrhoeae MS11

42.857

95.227

0.408
  pilG Neisseria meningitidis 44/76-A

42.25

95.465

0.403
  pilC Vibrio cholerae strain A1552

40.5

95.465

0.387
  pilC Vibrio campbellii strain DS40M4

38.75

95.465

0.37
  pilC Thermus thermophilus HB27

37.94

94.988

0.36

Multiple sequence alignment