Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CP48_RS07220 Genome accession   NZ_CP013662
Coordinates   1165656..1166285 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 08-00022     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1160656..1171285
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CP48_RS07195 (CP48_05780) ycbZ 1161046..1162806 (-) 1761 WP_000156516.1 AAA family ATPase -
  CP48_RS07200 (CP48_05785) matP 1162992..1163444 (+) 453 WP_000877158.1 macrodomain Ter protein MatP -
  CP48_RS07205 (CP48_05790) ompA 1163519..1164571 (-) 1053 WP_001307702.1 porin OmpA -
  CP48_RS07215 (CP48_05800) sulA 1164928..1165437 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  CP48_RS07220 (CP48_05805) sxy/tfoX 1165656..1166285 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  CP48_RS07225 (CP48_05810) yccS 1166248..1168410 (-) 2163 WP_000875061.1 YccS family putative transporter -
  CP48_RS07230 (CP48_05815) yccF 1168420..1168866 (-) 447 WP_001261235.1 YccF domain-containing protein -
  CP48_RS07235 (CP48_05820) helD 1168989..1171043 (+) 2055 WP_040091636.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=163671 CP48_RS07220 WP_000839153.1 1165656..1166285(+) (sxy/tfoX) [Escherichia coli strain 08-00022]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=163671 CP48_RS07220 WP_000839153.1 1165656..1166285(+) (sxy/tfoX) [Escherichia coli strain 08-00022]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGATTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment