Detailed information NTG0163644

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: AUO94_RS08265
• Genome accession: NZ_CP013661
• Coordinates: 1657782..1659158 (-)
• Length: 458 a.a.
• NCBI ID: WP_058386757.1
• Uniprot ID: -
• Organism: Planococcus kocurii strain ATCC 43650
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1652782..1664158

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AUO94_RS08240 (AUO94_16565)	epsC	1652907..1653569 (-)	663	WP_058386752.1	serine O-acetyltransferase EpsC	-
AUO94_RS08245 (AUO94_16570)	gltX	1653882..1655345 (-)	1464	WP_058386753.1	glutamate--tRNA ligase	-
AUO94_RS08250 (AUO94_16575)	ispF	1655386..1655886 (-)	501	WP_058386754.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AUO94_RS08255 (AUO94_16580)	ispD	1655883..1656578 (-)	696	WP_058386755.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
AUO94_RS08260 (AUO94_16585)	-	1656609..1657688 (-)	1080	WP_058386756.1	PIN/TRAM domain-containing protein	-
AUO94_RS08265 (AUO94_16590)	radA	1657782..1659158 (-)	1377	WP_058386757.1	DNA repair protein RadA	Machinery gene
AUO94_RS08270 (AUO94_16595)	-	1659220..1661682 (-)	2463	WP_058386758.1	ATP-dependent Clp protease ATP-binding subunit	-
AUO94_RS08275 (AUO94_16600)	-	1661679..1662770 (-)	1092	WP_058386759.1	protein arginine kinase	-
AUO94_RS08280 (AUO94_16605)	-	1662760..1663293 (-)	534	WP_058386760.1	UvrB/UvrC motif-containing protein	-
AUO94_RS08285 (AUO94_16610)	-	1663306..1663776 (-)	471	WP_058386761.1	CtsR family transcriptional regulator	-

Sequence

Protein

• Length: 458 a.a.
• Molecular weight: 49875.34 Da
• Isoelectric Point: 6.4242

>NTDB_id=163644 AUO94_RS08265 WP_058386757.1 1657782..1659158(-) (radA) [Planococcus kocurii strain ATCC 43650]
MAKKKTKFICQSCGYESARWMGKCPGCAAWNTMTEEVEVAAPKGTRGAFQHSAAVPQKAIPINAIETQDEPRVETELSEL
NRVLGGGIVPGSLVLIGGDPGIGKSTLLLQVSAMLANSGNRVLYISGEESIRQTKLRAERLDASSSELFIYAETNLELIH
HTIEDVAPDFVIIDSIQTVHHPEVTSAPGSVTQVRESTAELMRIAKTKNIAIFLVGHVTKEGQIAGPRILEHMVDTVLYF
EGERHHTYRILRSVKNRFGSTNEIAIFEMLQSGLKEVLNPSELFLQERSSGSAGSTVVASMEGTRPILVEIQALVTPSSF
NYPKRMATGIDVNRVTLLMAVLEKRVGMLLQAQDAYIKVAGGVKLDEPAIDLAVLASIVSSFRDKAPNVYDCIIGEVGLT
GEVRRVSRIEQRVQEAAKLGFKRAIIPASNLGGWDYPEGIRVVGVESVNDALKEIFPQ

Nucleotide

• Length: 1377 bp

>NTDB_id=163644 AUO94_RS08265 WP_058386757.1 1657782..1659158(-) (radA) [Planococcus kocurii strain ATCC 43650]
ATGGCTAAGAAAAAGACGAAATTTATTTGTCAGTCGTGTGGCTATGAATCGGCTAGATGGATGGGGAAATGTCCGGGCTG
TGCAGCGTGGAATACGATGACTGAAGAAGTAGAAGTGGCTGCTCCTAAAGGGACGCGTGGTGCTTTTCAGCATAGTGCGG
CGGTTCCTCAAAAAGCGATACCGATTAATGCCATTGAAACGCAAGATGAACCACGAGTAGAAACAGAGCTCAGCGAATTA
AACCGTGTGCTGGGTGGTGGGATTGTACCTGGATCACTGGTACTTATTGGAGGAGACCCCGGTATCGGGAAATCAACGTT
GCTGTTGCAGGTTTCTGCGATGCTTGCAAATAGTGGGAACCGGGTATTATATATTTCCGGAGAAGAATCGATTAGACAAA
CTAAATTGCGTGCAGAGCGTTTAGATGCATCATCTTCTGAGTTATTTATCTACGCTGAAACAAATCTTGAATTGATTCAT
CACACGATTGAAGATGTAGCACCTGATTTTGTTATTATCGATTCAATTCAGACTGTTCACCACCCAGAAGTCACCTCTGC
ACCGGGGAGTGTGACGCAAGTAAGAGAAAGTACGGCAGAATTAATGCGAATCGCTAAAACAAAAAATATTGCCATTTTTC
TAGTGGGACACGTAACCAAAGAAGGGCAAATTGCAGGACCTCGGATTTTGGAACATATGGTAGATACGGTGTTGTATTTT
GAAGGCGAACGCCACCATACATACCGCATTTTACGCAGTGTGAAAAACCGTTTTGGTTCAACAAATGAAATCGCGATTTT
TGAAATGCTTCAAAGTGGATTAAAAGAAGTGTTGAATCCATCAGAACTATTTTTACAAGAGCGGTCGAGTGGTTCGGCAG
GCTCAACAGTCGTCGCTTCAATGGAAGGAACACGGCCGATTTTAGTTGAAATTCAAGCATTGGTGACTCCTTCAAGTTTT
AATTATCCGAAACGGATGGCGACGGGAATTGACGTCAATCGAGTGACCTTATTGATGGCGGTTCTAGAAAAGCGCGTTGG
TATGCTTTTGCAAGCGCAAGACGCGTACATTAAAGTTGCAGGTGGCGTAAAGCTTGACGAACCAGCGATTGATTTGGCTG
TATTGGCAAGTATTGTTTCAAGTTTCCGAGACAAAGCGCCAAACGTTTATGATTGTATTATTGGAGAGGTCGGATTGACT
GGTGAAGTTAGACGCGTATCGCGTATTGAGCAGCGCGTTCAAGAAGCAGCAAAACTAGGCTTTAAGCGTGCGATTATTCC
AGCATCTAATTTAGGTGGTTGGGATTATCCAGAAGGAATTCGCGTAGTCGGTGTAGAAAGTGTTAACGATGCATTAAAAG
AAATTTTTCCACAGTAA

Domains

Predicted by InterproScan.

• AAA domain (AAA_25) (70-222)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

• Lon protease (S16) C-terminal proteolytic domain (Lon_C) (352-433)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	72.848	98.908	0.721
radA	Streptococcus pneumoniae Rx1	61.623	99.563	0.614
radA	Streptococcus pneumoniae D39	61.623	99.563	0.614
radA	Streptococcus pneumoniae R6	61.623	99.563	0.614
radA	Streptococcus pneumoniae TIGR4	61.623	99.563	0.614
radA	Streptococcus mitis NCTC 12261	61.623	99.563	0.614
radA	Streptococcus mitis SK321	61.623	99.563	0.614